@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0253: (2015-11-29 )
MEAYMLASNSTETILVADQNIYNSSASNNPALNTQDLSGSTPDKDKYVTLNSKEEWDKFFKLQNNPSTNITNKVRTKPHVRKNSNGMYRYTAEENKYNGKEIIGKVAEQIKEEISQKIKSDTMKLVKLKESKNEDNSVKPAIRIVLNDNVKEINMADLLSGSVCKEYNVKAITFCFPDKSNTRGIRCRIDEHGTRIYEVANGSYEMDLRWYCEGKECKIKILMKDDGSIRLIEDNGITEEQLKAHKEIRVGRQYEAKSLHEALALQLPQLQQKCSETTEILSRLADVSTSQAQQVLSAQVSK
Atome Classification :
(20 SA)
--------------------.........10---........--------20.......-.30........40........50........60........70...---.....80........90........100.......110.......120.......130--------.....-....140....---...150.......160.......170---------.......180......--------.190..-----.....200.......210....-------...220.......230..---------....-----.240..------------.-....250------.........260...--------------------------....270-------........280........290.......300--------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------M
E
A
Y
M
LASNST---
E
T
I
L
V
ADQ--------NIYNSSASN-NPALNTQDLSGSTPDKD
K
Y
V
T
LN
S
K
E
E
W
D
K
F
F
KLQNNPSTNITNKV---RTKPHVRKNSNG
M
Y
R
Y
TAEENKYN
G
K
E
I
I
G
K
V
A
E
Q
I
K
E
E
I
S
Q
K
I
K
S
D
T
M
K
L
V
K
LKE----------SKNED-NSV
K
P
A
I
R
I
V
L---NDNVKE
I
N
M
A
D
L
L
S
G
S
V
CKEYNV
K
A
I
---------
T
F
CFPDKSNTR
G
I
R
C
R
--------IDEHG
T
-----
R
I
Y
E
VANG
S
Y
E
M
D
L
R
W
Y
CEGK
E
-------
C
K
I
K
I
L
M
KDDG
S
I
R
L
I
ED---------NGI
T
-----
E
E
Q
L
K
A
------------
H
-
K
E
IRV--------GRQ
Y
E
A
K
S
L
H
E
A
L
A
L
--------------------------
Q
L
P
Q
L
Q
--------
Q
K
C
S
E
T
T
E
I
L
-
S
R
L
ADV
S
T
S
Q
A
Q
Q
V
L
S
A
QVSK--------------------------------------------
31
Fugue
76.93
17%
14
- C6 -
4USR
2
?
A:
[1-357]
GPAMPPILD
V
I
V
I
G
GG
Q
A
A
L
T
T
A
Y
F
L
R
R
T
S
L
---
S
Y
L
L
L
D
E
Q
PGPGGAWL
H
A
W
D
S
L
R
L
F
-
S
P
A
A
W
S
S
I
A
G
W
P
M
P
S
P
T
E
P
G
N
P
T
R
N
D
V
I
D
Y
L
R
R
Y
E
D
R
Y
Q
F
P
I
Q
R
P
V
---
R
V
D
T
V
T
R
L
D
D
--
L
W
R
V
Q
A
G
D
Q
Q
W
L
A
R
A
V
I
S
A
T
G
T
W
S
K
P
F
I
P
P
Y
E
G
R
E
L
F
Q
G
A
Q
I
H
S
----------
A
H
Y
R
T
-
P
A
P
F
A
G
K
R
V
M
V
V
G
-
G
G
N
S
G
A
Q
V
L
A
E
L
S
S
V
S
E
T
L
W
I
T
Q
E
P
P
---------
A
F
-
L
P
D
E
V
D
G
R
V
L
F
E
R
--------
A
T
A
R
W
K
A
Q
Q
EG
R
S
I
D
E
P
A
G
G
F
G
-
D
I
V
M
V
P
P
V
R
E
-------
A
R
E
R
G
V
L
V
A
E
R
P
F
A
R
F
T
E
---------
T
G
V
E
W
ADG
R
R
E
N
L
D
A
V
I
W
CSGFRPALD
H
L
R
E
L
G
V
--------
V
E
A
D
G
K
V
Q
V
E
D
T
R
V
V
--------------------------
K
Q
P
N
L
W
L
V
GYGDWT
G
M
A
S
A
T
L
I
G
V
-
T
R
T
A
R
S
T
A
D
Q
V
V
Q
A
L
T
A
T
P
----------------------------------------------
36
Fugue
66.01
18%
9
- C4 -
3RFY
-
CYP38_ARATH
A:
[78-433]
---------------------
G
G
I
L
L
V
A
N
P
V
IPD
V
S
V
L
I
S
G
P
--------
P
I
K
D
P
E
A
L
L
-
R
Y
A
L
P
----------------
I
D
N
K
A
I
R
E
V
Q
K
P
L
E
D
I
T
D
S
L
K
I
A
G
V
---
K
A
L
D
S
V
E
R
N
V
R
Q
A
S
R
T
L
Q
Q
G
K
S
I
I
V
A
G
F
A
E
S
K
K
D
H
G
N
E
M
I
-
E
K
L
E
A
G
M
Q
D
M
L
K
I
V
E
----------
D
R
K
R
D
-
A
V
A
P
K
Q
K
E
I
L
K
---
Y
V
G
G
I
E
E
D
M
V
D
G
F
P
Y
E
V
P
E
E
Y
R
N
M
P
L
LK
G
R
A
S
V
D
M
K
V
K
I
K
D
N
P
N
I
E
D
C
V
F
R
--------
I
V
L
D
G
Y
-----
N
A
P
V
T
A
G
N
F
V
D
L
V
E
R
H
F
Y
D
G
M
E
------------
I
Q
R
S
D
G
F
V
V
Q
T
G
D
P
E
G
P
A
E
G
F
I
D
P
S
T
-----
E
K
T
R
T
V
------------
P
-
L
E
I
M
V
TGEKT
P
F
Y
G
S
T
L
E
E
L
G
L
Y
K
A
Q
V
V
I
P
F
N
A
F
G
T
M
A
M
A
R
EEF
E
N
D
S
GSSQVF
W
L
L
K
E
S
--------
E
L
T
P
S
N
S
N
I
L
D
G
R
Y
A
V
F
G
Y
V
T
D
N
E
D
F
L
A
D
L
K
V
GDVIE
S
I
Q
V
VSGLENLANPSY-----------------------
38
Fugue
51.87
9%
26
- C2 -
2OLN
3
?
A:
[3-387]
-----ESYD
V
V
V
V
G
GG
P
V
G
L
A
T
A
W
Q
V
A
E
R
G
H
---
R
V
L
V
L
E
R
H
--------
T
F
F
N
E
N
G
G
T
S
G
A
E
R
H
W
R
L
Q
Y
T
Q
--
E
D
L
F
R
L
T
L
E
T
L
P
L
W
R
A
L
E
S
R
C
E
R
R
L
I
H
E
I
G
S
L
---
W
F
G
D
T
D
V
V
T
N
E
G
Q
I
S
G
T
A
A
M
M
D
K
L
S
V
R
Y
E
W
L
K
A
T
D
I
E
R
R
F
G
F
R
G
L
P
R
D
Y
E
G
F
L
Q
P
D
G
G
T
I
D
V
R
G
T
L
A
A
L
F
T
-
L
A
Q
A
A
G
A
T
L
R
A
---
G
E
T
V
T
E
L
V
P
D
A
D
G
V
S
V
T
T
D
R
G
T
Y
R
A
G
---------
K
V
V
L
A
C
G
P
Y
T
N
D
L
L
E
P
LGARLA
Y
S
V
Y
E
M
A
I
-----
A
A
Y
R
Q
A
T
P
V
T
E
A
P
F
W
F
A
F
Q
Q
P
T
PQDTN
L
F
Y
G
F
G
H
N
P
W
A
P
G
E
F
V
R
C
G
P
---------
D
F
E
V
-----
D
P
L
D
H
P
------------
S
-
A
A
T
G
V
--------
A
D
R
R
Q
M
D
R
L
S
G
W
L
R
D
--------------------------
H
L
P
T
V
D
--------
P
D
P
V
R
T
S
T
C
L
-
A
V
L
P
T
D
P
E
R
Q
F
F
L
G
T
A
R
D
L
M
T
HGEKLVVYGAGWAFKF
V
P
L
F
G
R
I
C
A
D
L
A
VEDSTAYDISRLAPQS
19
PsiBlast_PDB
46.98
26%
-21
- C7 -
1N4C
-
A:
[72-150]
--------------------------------------------------------------------------------------------------------------------------------------------
I
A
E
M
R
K
E
E
M
A
K
E
M
D
P
E
K
L
K
I
L
E
W
I
E
----------
G
K
E
R
N
I
R
A
L
L
S
T
M
H
T
V
L
WAG
E
T
K
W
K
P
V
G
M
A
D
L
V
T
P
E
Q
V
K
K
V
Y
R
K
A
V
---------
L
V
V
H
P
D
K
A
T
G
Q
P
Y
E
Q
Y
--------
A
K
M
I
F
M
-----
E
L
N
D
A
W
S
E
F
E
N
Q
G
Q
K
P
L
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
45.22
35%
-12
- C5 -
3AKF
1
?
A:
[10-42]
----------------------------------------------------------------------------------------------------
T
F
T
N
P
L
AEK
R
A
D
P
H
I
F
K
H
T
D
G
Y
Y
Y
F
T
A
T
V
P
E
Y
D
R
I
V
L
R
R
A
T
T
L
Q
G
L
A
T
A
P
E
T
T
I
W
T
K
H
A
S
G
V
M
G
A
----------
H
I
W
A
P
-
E
I
H
F
I
D
G
K
W
Y
V
---
Y
F
A
A
G
S
T
S
D
V
W
A
I
R
M
Y
V
L
E
S
G
A
A
N
P
L
---------
T
G
S
W
T
E
K
G
Q
I
A
T
P
V
S
S
--------
F
S
L
D
A
T
-----
T
F
V
V
N
G
V
R
H
L
A
W
A
Q
R
N
P
A
E
D
N
N
-------
T
S
L
F
I
A
K
M
A
N
P
W
T
I
S
G
T
P
---------
T
E
I
S
-----
Q
P
T
L
S
W
------------
E
-
T
V
G
Y
K
--------
V
N
E
G
P
A
V
I
Q
H
G
G
K
V
F
--------------------------
L
T
Y
S
A
S
--------
A
T
D
A
N
Y
C
L
G
M
-
L
S
A
S
A
S
A
D
L
L
N
A
A
S
W
T
K
S
S
Q
P
--------------------------------------------
35
Fugue
44.58
20%
40
- C6 -
2WGO
-
?
A:
[-1-96]
-------------------------------------------------------------------------------------------------------------------
S
L
I
L
D
G
D
L
L
K
D
K
L
K
L
P
V
I
D
N
L
F
G
K
E
L
L
D
K
F
Q
D
D
I
K
D
K
Y
G
V
D
T
K
D
L
K
I
L
K
T
----------
S
E
D
------
K
R
F
Y
Y
V
S
V
---
D
A
G
----------
D
G
E
K
C
K
F
K
I
R
K
D
V
--------------
D
V
P
K
M
V
G
R
K
C
R
--------
K
D
D
D
D
D
-----
D
G
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
44.22
15%
60
- C6 -
2PND
-
?
A:
[0-118]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
H
P
T
L
K
T
P
---------
E
S
V
T
G
T
W
K
G
D
V
K
I
Q
C
I
---------------------
Y
D
P
L
R
G
Y
R
Q
V
L
V
K
W
L
V
R
H
G
S
-------
D
S
V
T
I
F
L
R
D
S
-----------------
T
G
D
H
-----
I
Q
Q
A
K
Y
------------
R
-
G
R
L
K
V
--------
S
H
K
V
P
G
D
V
---
S
L
Q
I
--------------------------
N
T
L
Q
M
D
--------
D
R
N
H
Y
T
C
E
V
T
-
W
Q
T
P
D
G
N
Q
V
I
R
D
K
I
I
E
L
R
V
R
K
--------------------------------------------
22
HHSearch
43.92
25%
32
- C7 -
2ZRR
-
?
A:
[10-54]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
D
-------
R
R
-------
K
K
A
E
V
I
I
---------------------
T
E
L
L
D
------------
D
-
L
E
I
------------
D
L
G
N
E
S
L
R
K
V
L
G
S
--------------------------
Y
L
K
K
L
K
--------
N
E
G
T
S
V
P
L
V
L
-
S
R
M
N
I
E
I
S
N
A
I
K
K
D
G
V
S
L
N
E
N
--------------------------------------------
10
PsiBlast_PDB
43.77
33%
23
- C7 -
1WYB
-
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
D
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
43.68
33%
25
- C7 -
3A66
5
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
Y
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
42.93
33%
26
- C7 -
2ZLY
2
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
Y
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
42.85
33%
24
- C7 -
3VWM
3
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
Y
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
42.79
33%
23
- C7 -
3VWQ
3
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
Y
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
42.67
26%
182
- C- -
1XI5
-
AUXI_BOVIN
J:
[800-879]
--------------------------------------------------------------------------------------------------------------------------------------------
I
A
E
M
R
K
E
E
M
A
K
E
M
D
P
E
K
L
K
I
L
E
W
I
E
----------
G
K
E
R
N
I
R
A
L
L
S
T
M
H
T
V
L
WAG
E
T
K
W
K
P
V
G
M
A
D
L
V
T
P
E
Q
V
K
K
V
Y
R
K
A
V
---------
L
V
V
H
P
D
K
A
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
42.65
33%
25
- C7 -
3A65
1
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
D
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
42.47
33%
24
- C7 -
1WYC
-
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
D
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
42.46
33%
27
- C7 -
2ZM7
4
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
D
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
42.35
33%
29
- C7 -
2DCF
5
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
D
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
42.29
33%
27
- C7 -
2ZM8
3
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
Y
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
42.28
33%
26
- C7 -
2ZM0
2
NYLC_FLASK
A:
[285-338]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
-
G
G
V
A
P
G
G
R
V
V
S
---
E
D
W
V
R
R
V
-----
L
A
G
G
S
H
E
A
M
T
D
K
G
F
---------
T
N
T
F
P
D
G
S
Y
T
R
Q
W
W
C
T
--------
G
N
E
R
G
N
-----
V
S
G
I
G
I
H
G
Q
N
L
W
L
D
P
L
T
D
S
V
I
V
-------
K
L
S
S
W
P
D
P
Y
T
E
H
W
H
R
L
Q
N
---------
G
I
L
L
-----
D
V
S
R
A
L
------------
D
-
A
V
----------------------------------------------------------------------------------------------------------------------------------------------