@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA0127: (2016-03-12 )
MKSDSLKENIIYQGLYQLIRTMTPLITIPIISRAFGPSGVGIVSFSFNIVQYFLMIASVGVQLYFNRVIAKSVNDKRQLSQQFWDIFVSKLFLALTVFAMYMVVITIFIDDYYLIFLLQGIYIIGAALDISWFYAGTEKFKIPSLSNIVASGIVLSVVVIFVKDQSDLSLYVFTIAIVTVLNQLPLFIYLKRYISFVSVNWIHVWQLFRSSLAYLLPNGQLNLYTSISCVVLGLVGTYQQVGIFSNAFNILTVAIIMINTFDLVMIPRITKMSIQQSHSLTKTLANNMNIQLILTIPMVFGLIAIMPSFYLWFFGEEFASTVPLMTILAILVLIIPLNMLISRQYLLIVNKIRLYNASITIGAVMNLVLCLVLIYFYGIYGAAIARLITEFILLIWRFVDITKINVKLNIVSTIQCVIAAVMMFIVLGVVNHYLPPTMYATLLLIAIGIVVYLLLMMTMKNQYVWQILRHLRHKTI
Atome Classification :
(16 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......----.20........30.....-...40----------..-------...-----...50.....-..--.60..-----------......70.------...-....80........90....------------------....100....--.---------..----.110--.-..-.-----...----.120.----......130-------------.......140.......150......---...-----160.-......170.......180..-....-.190...-..-----...200..-.....210----.......220.......230......-.240..--------..------...250.....--------.--..260---------..-....-.--270---.-..-....280....------------------...290.......300.......310...---..--------------------..320---...-......330...--....340..-..-...-350..------------------......360.......-----.370.--..--....-380.....-.--..390.---......400..--------------.....410-.......420----------......-----.430.....-..440.--......------------450.....---..460.....-..470.....--------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKS
D
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N
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----
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TMT
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RAFG-PS
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---
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MK
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RHKTI--------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
80.29
19%
-160
- C3 -
4TXD
1
?
A:
[21-369]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
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----------------------------------------------------------------------------------
L
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---
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L
A
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--------------------------------------
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---
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G
G
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
79.86
17%
-180
- C2 -
3ES5
-
?
A:
[42-420]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
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-------
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--------
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--------
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N
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Y
------------
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F
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---
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S
DAKKFYAD-------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
78.92
17%
-146
* C6 *
4R6H
5
MSME_BACSU
A:
[28-421]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
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H
----------------------------------------
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--
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--
R
-----------------------------------------------------
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D
-----
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Y
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---
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-----
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--------
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---
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---
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--------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
72.01
15%
-141
- C7 -
3W4T
9
?
A:
[17-446]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
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L
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A
---
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M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
Fugue
68.22
16%
-145
* C5 *
4UQU
10
?
A:
[1-462]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
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E
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N
A
A
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A
GSP-
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R
T
A
F
T
H
P
T
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----------
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-------
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-----
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-----------
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E
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------
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-
K
--------
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A
R
A
G
R
A
L
------------------
E
A
A
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W
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T
L
D
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N
---------
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Y
----
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---
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-
L
-----
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G
----
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T
M
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----
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-------------
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T
T
D
P
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L
T
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--
F
A
A
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M
A
GAD
L
V
G
-----
V
A
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L
-
N
R
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W
V
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E
A
V
T
I
P
A
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V
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-----
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----
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L
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R
-
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M
M
Q
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--------
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------
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A
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A
-
T
T
A
F
C
--------
Y
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R
M
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M
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---------
M
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-
L
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---
G
A
C
I
T
P
------------
E
--------------------
F
G
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-----
N
V
R
-
L
T
K
V
F
T
N
M
P
L
V
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K
P
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D
F
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V
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E
F
-
C
E
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T
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C
-
A
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CPSKAITE
G
P
R
T
FEGRS
I
H
N
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-----
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A
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V
E
W
L
I
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--------------
N
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----------------------
G
-----
K
I
N
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------------------------------------------
G
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A
D
H
F
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D
T
-
V
S
F
-
R
K
D
R
V
K
--------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
65.11
12%
-157
* C4 *
1D8C
8
MASZ_ECOLI
A:
[3-722]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
T
I
T
Q
SR
L
R
I
D
A
N
F
K
R
F
V
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L
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N
F
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----
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---------
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----
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----
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------
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--------
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Y
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---
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M
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L
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L
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F
L
D
R
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G
---
D
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M
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S
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M
EAGPMLRKNQMKST
P
W
I
K
-----
A
Y
E
-
R
N
N
V
L
S
G
L
F
C
G
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--
R
G
K
A
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I
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K
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M
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L
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A
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------------------
Q
K
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D
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I
A
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---
N
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P
L
L
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D
L
L
TIPVAENANWS
A
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-
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G
I
L
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----------
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------------
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N
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---
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A
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-
L
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M
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AGDPAYRPMAGNFANS
C
A
F
K
A
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D
L
I
F
L
G
VKQPNGYT
E
P
L
L
H
A
W
R
L
R
E
K
ES---------------------------------------------------------------------------------------------------
16
Fugue
64.83
19%
-168
- C6 -
4UUW
5
?
A:
[1-394]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
R
A
E
I
L
G
V
G
-
T
E
L
----
L
Y
G
E
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-
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Y
------------------------------------------------
A
L
-----------
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V
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L
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A
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L
A
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----------------------------
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GLGPTPDD
V
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----
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-
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-----
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----
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L
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----
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L
G
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I
E
A
-------------
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A
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---
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W
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--------------------
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---------
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--------
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------
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--------
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--
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---------
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---
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------------------
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I
K
K
K
L
L
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---------------
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W
G
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---
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----------------------------------
M
T
----------------------
L
-
A
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A
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K
-
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------------------
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S
T
M
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L
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-----------------
G
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--------------
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----------
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---------
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T
-
V
R
L
R
S
V
Y
A
A
L
A
L
L
V
T-----------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
61.61
10%
-155
- C5 -
2ECF
-
?
A:
[22-741]
KLT
L
E
A
I
T
GPLPLS
G
P
T
L
M
K
P
K
V
A
PDGS
R
V
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L
R
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K
DSDRN
Q
L
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L
W
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D
IGSGQTRLLVDSKVVLAMTGIV
D
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PDAQ
R
L
L
F
PLGG
E
L
Y
L
Y
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LKQEGKAAVRQLTHGEGFATD
A
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PKGG
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S
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GR
N
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DLASG
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------
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----
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--------
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---
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T
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------------------
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L
A
Q
Q
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---
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--------------------
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G
G
-----
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A
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----
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-
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P
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------------------
I
G
V
Q
G
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N
-
G
G
Y
M
T
L
M
-----
L
L
A
K
A
SD
S
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--
A
C
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V
-
A
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G
A
P
V
T
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-
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--
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L
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---
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M
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--------------
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--------
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C
LKP-----------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
59.26
13%
-131
- C4 -
4BQ2
7
?
A:
[2-747]
-----------------------------------------------------SHMLFDFENDQVPSN
I
H
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----
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----
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-------------
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----
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----------------
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N
W
T
D
P
A
Y
Y
------------------
D
N
N
R
I
P
F
F
A
N
G
W
V
I
G
D
F
K
T
V
S
S
G
A
D
F
W
G
A
---
M
P
--------------------
D
V
F
-----
D
P
E
-
F
K
V
R
A
M
E
T
A
R
V
V
--
S
E
E
I
K
N
S
P
W
-
C
V
G
V
F
I
-
D
N
-
E
K
------------------
S
F
G
R
P
D
S
------
D
K
A
-----
Q
Y
G
I
P
--
I
H
--
T
L
G
R
-
P
-
S
E
G
V
P
T
-
R
--
Q
A
F
S
K
L
---
L
K
A
K
Y
K
T
I
A
A
L
--------------
N
N
A
W
G
L
K
L
-
S
-------
S
W
----------
A
E
F
D
L
G
-----
V
D
V
K
A
L
P
V
T
-----------
D
T
L
R
------------
A
D
Y
S
M
L
L
S
---
A
Y
A
D
Q
Y
F
K
V
V
-
H
G
A
-
V
E
H
Y
M
P
N
H
L
Y
L
G
ARFPDWGMP
M
E
V
V
K
A
A
A
K
YAD
V
V
S
Y
N
S
YKEGLPKQKWAFLAELD
K
P
S
I
I
G
E
F
H
I
G
A
MDHGSYHPGL
I
H
A
AS
Q
A
D
R
G
E
M
Y
K
D
Y
M
Q
S
V
I
D
NPYFV
G
A
H
W
FQYMDSPLTGRAYDGENYNVGFVDVTDTPY
Q
E
M
V
D
A
A
K
E
V
N
A
K
I
YTERL
2
HHSearch
53.34
16%
-135
- C7 -
3W4T
8
?
A:
[13-216]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
G
D
P
K
-
K
A
I
V
R
L
S
I
----
A
M
M
I
G
M
S
V
Q
T
L
Y
N
L
A
D
G
I
W
V
S
G
-
L
G
P
-
E
S
L
A
A
V
--------
G
L
------
F
F
P
V
F
-
M
G
I
I
A
--------
L
--
A
A
G
L
G
---------
V
G
-
T
S
S
A
-
I
--
A
R
R
---
I
-
G
A
R
D
K
E
G
A
D
N
V
A
V
H
------------------
S
L
I
L
S
L
I
L
G
V
T
I
T
I
T
M
L
P
A
I
D
S
L
F
R
S
-
M
G
AKG
E
A
--------------------
V
E
L
-----
A
I
E
-
Y
A
R
V
L
L
A
G
A
F
I
I
--
V
F
N
N
V
G
N
-
G
-
I
L
-
R
G
E
-
G
D
-
A
N
------------------
R
A
M
L
A
M
V
L
-
G
S
G
L
N
I
V
-----
L
D
P
I
F
--
I
Y
TL
G
F
G
V
-
V
-
G
A
A
Y
A
T
-
L
--
L
S
M
V
V
T
---
S
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
28.19
15%
804
- C7 -
3W5A
-
SARCO_RABIT
C:
[15-27]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
I
T
V
I
-----
L
I
W
L
L
--
V
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
21.30
22%
1889
- C1 -
2V6X
-
B:
[45-53]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
-
L
N
T
-
L
K
K
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
21.12
38%
952
- C7 -
2L3N
-
A:
[83-95]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
D
S
Q
Q
I
-
L
N
R
-
L
R
E
R
----------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
17.33
0%
1056
- C7 -
1FME
-
?
A:
[15-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
E
L
R
D
F
-
I
E
K
-
F
K
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
16.66
15%
909
* C7 *
1BDE
1
A:
[1-13]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
G
---
D
T
--------------------
W
A
G
-----
V
E
A
-
I
I
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
12.87
18%
683
- C7 -
2VOY
1
?
D:
[5-21]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
M
A
I
G
G
Y
V
G
A
-
A
T
V
G
A
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------