@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : SA1593: (2016-03-27 )
MNKHKKGSIFGIIGLVVIFAVVSFLFFSMISDQIFFKHVKSDIKIEKLNVTLNDAAKKQINNYTSQQVSNKKNDAWRDASATEIKSAMDSGTFIDNEKQKYQFLDLSKYQGIDKNRIKRMLVDRPTLLKHTDDFLKAAKDKHVNEVYLISHALLETGAVKSELANGVEIDGKKYYNFYGVGALDKDPIKTGAEYAKKHGWDTPEKAISGGADFIHKHFLSSTDQNTLYSMRWNPKNPGEHQYATDIKWAESNATIIADFYKNMKTEGKYFKYFVYKDDSKHLNK
Atome Classification :
(20 SA)
--------------------------------------------.....-....10...----------.....20........30....----.---...40.-------------.-......------50..-.....---------------.60........70-....--....80-----.........90-.........100......---.110--.....--....-120...--.----...130------....-...--..140------........150.......160--..-------.......170..--------....------.180....------.-----.--.------190-------.---..---------..--...200--....---------...210------.....--..-.220....----...230--...------....240.....-..250.......260..---.....----270....-------...280..--------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------MNKHK-KG
S
I
F
G
I
I
G
----------
L
V
V
I
F
A
V
V
S
F
L
F
F
S
M
I
S
D
Q
I
F
----
F
---
K
H
V
KSD-------------
I
-
K
I
E
K
L
N
------
V
T
L
N
-
D
A
A
K
K
---------------
Q
I
N
N
Y
T
S
Q
Q
VSNK-KNDA--WRDA
S
------
A
T
E
I
K
S
A
MDS--GTFIDNEK
Q
K
Y
Q
F
LD
L
S
K
---YQ----GI
D
K
N
--
R
I
K
R
-
M
LVDR
P
--
T
----
L
L
KH--------
T
D
D
F
-
L
K
A
--
A
K
DK-------HVN
E
V
Y
L
I
S
H
A
L
L
ETG
A
V
K
----
S
E
-------LAN
G
V
EIDG
K
K
Y
--------
Y
N
F
Y
------GVGALDKD------P-----I--
K
------
T
G
--------
A
---
E
Y
---------
A
K
--KHGWDT--
P
E
K
A---------ISG
G
A
-------
D
F
I
H
K
--
H
F
-LSSTDQN
T
----
L
Y
S
M
RW--NPK------NPGEHQYAT
D
I
K
-WAESN
A
T
I
I
A
D
F
Y
K
NMK---TEG
K
Y
----
F
K
Y
F
V
Y
K-------D
D
S
KHLNK--------------------------
30
Fugue
74.52
17%
-14
* C4 *
4LUQ
3
?
A:
[20-428]
HMT
A
T
S
D
L
I
E
S
L
I
S
Y
SWDDWQVT
R
Q
E
A
R
R
V
I
A
A
I
R
N
DNV
P
D
A
T
I
A
A
L
D
K
-
S
G
S
L
I
K
L
F
Q
R
VGP
P
E
L
A
R
S
L
I
A
S
I
A
G
R
T
T
M
Q
R
Y
Q
A
R
N
A
L
I
----
R
---
S
L
I
N
N
P
LGTQTDNWIYFP
T
I
-
T
F
F
D
I
C
------
A
D
L
A
-
D
A
A
G
R
L
GFA
A
A
G
A
T
G
V
A
S
QA
I
Q
G
P
F
S
G
V
G
A
T
G
V
-
N
P
T
D
--
L
P
S
I
A
------
F
G
D
Q
L
K
L
L
N
---
K
D
P
A
T
V
T
K
Y
S
N
P
L
G
D
L
G
A
---
Y
L
S
Q
LS
P
Q
D
K
L
--
N
Q
A
Q
-
T
L
V
G
Q
P
IS
T
----
L
F
P
D
AYPGNPPS
R
A
K
V
-
M
S
A
--
A
A
R
K
------------
Y
D
L
T
P
Q
L
I
G
A
I
I
L
A
----
E
Q
-------
R
D
Q
T
R
D
E
D
A
K
D
Y
--------
Q
A
A
V
------
S
I
K
S
A
N
T
S
I
G
LGQV
V
-----
V
--
S
------
T
A
--------
I
---
K
Y
ELFTDLLG
Q
P
V
--
R
R
G
L
S
R
--
K
A
V
A
T
L
L
A
S
D
E
F
N
I
F
A
T
A
-------
R
Y
I
R
Y
V
A
N
L
-
A
S
Q
Q
D
L
R
K
----
L
P
K
T
R
G
--
A
F
P
------
S
I
D
L
R
A
Y
A
G
N
P
R
N
W
P
R
D
N
V
R
A
L
A
S
E
Y
T
S
R
P
WDD
N
L
S
P
G
----
W
P
M
F
V
D
D
-------
A
Y
A
T
F
L
D
P
GMRFP---------------------
1
PsiBlast_PDB
73.22
23%
-23
- C3 -
4Q2W
3
A:
[135-278]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
N
P
F
L
F
K
D
L
T
E
ATN
Y
S
----
A
E
E
L
D
--
K
V
F
S
-
L
L
N
I
N
N
--
S
----
L
L
E
N
--------
K
G
A
T
-
F
K
E
--
A
E
E
H
Y------
H
I
N
A
L
Y
L
L
A
H
S
A
L
E
S
N
W
G
R
----
S
K
-------
I
A
-------
K
D
K
--------
N
N
F
F
------
G
I
T
----------------------------------------------------------
T
F
D
D
--
V
D
K
G
---------
I
L
G
A
T
-------
K
W
I
K
E
--
N
Y
-
I
D
R
G
R
---------
T
F
L
G
--
N
K
A
------
S
G
M
N
V
E
Y
A
S
D
P
Y
-
W
G
E
K
I
A
S
V
---------------------------------------------------------------------
35
Fugue
71.03
18%
5
* C2 *
4OOU
1
?
A:
[20-383]
-------------------------------------------S
E
F
L
K
A
-
S
G
S
N
F
Y
Y
G
G
----------
Q
K
V
F
L
S
G
V
N
F
A
W
R
S
Y
G
S
D
--
F
GNGQ
Y
---
A
S
N
G
P
A
-------------
L
-
K
D
W
I
N
K
------
V
K
A
S
-
G
G
N
T
A
---------------
R
V
W
V
H
V
E
G
Q
V
S
P
A
F
D
S
H
G
--
F
V
T
S
T
------
D
S
K
K
T
L
I
N
D
L
--
S
D
L
L
D
Y
A
N
G
Q
N
V
F
L
I
L
V
L
---
F
N
----
G
A
L
Q
N
N
S
N
V
Q
N
-
L
F
W
D
E
S
--
K
----
L
N
S
Y
--------
I
N
N
A
-
L
T
P
--
M
V
N
A
L
KSKPSL
A
A
W
E
V
L
N
E
P
E
G
T
L
Q
P
G
S
D
Q
----
N
S
CYDTSTL
A
A
Q
G
A
G
W
G
G
K
K
F
P
M
K
Q
I
L
K
T
I
N
W
I
------
S
S
A
I
H
N
A
D
------
S
K
A
L
V
T
V
--
G
------
S
W
--------
S
---
E
L
---------
T
Q
TD
S
F
G
Y
R
N
HY
K
D
S
C
---------
L
T
G
A
G
GKSNGII
N
F
Y
Q
M
--
H
T
-
Y
S
H
S
G
K
W
N
QNAP
F
K
V
N
R
W
--
A
Y
N
------
V
N
D
K
P
L
L
I
G
E
F
A
-
S
V
C
S
Q
N
E
G
I
Q
N
L
Y
K
Y
A
Y
---
N
N
G
-
Y
----
N
G
A
L
T
W
Q
FNSGGDC
S
D
T
Y
S
N
Q
M
Y
G
M
Q
A
L
K
GQNDQSGGKGGMVS
V
N
I
N
H
13
HHSearch
65.53
20%
-17
- C3 -
3FI7
-
?
A:
[35-177]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
I
--------
S
T
Q
A
-
M
D
L
--
C
K
K
Y
-------
N
L
Y
P
S
V
M
I
A
Q
A
A
L
E
S
N
W
G
R
----
S
E
-------
L
G
K
A
P
------
N
--------
Y
N
L
F
------
G
I
K
G
S
Y
N
G
------
K
-----
S
V
T
M
K
T
W
E
Y
S
D
S
K-------
G
W
Y
Q
I
N
---------
A
N
--
F
A
K
Y
P
S
--
H
K
E
S
---------
L
E
D
N
A
-------
K
K
L
R
N
--
G
P
-
S
---
W
D
S
S
----
Y
Y
K
G
A
W
RE
N
A
K
T
Y
K
D
A
T
A
W
L
Q
G
R
Y
A
T
D
N
T
-
Y
A
S
K
L
N
T
L
I
S
S
Y
-----------------------------------------------------------------
37
Fugue
65.35
11%
3
- C2 -
3TM8
5
?
A:
[20-328]
-----------------------------------------------
H
M
-
D
Y
V
S
I
R
V
S
T
----------
L
R
G
D
Q
K
I
D
F
N
A
Y
V
K
I
N
D
K
M
I
L
----
Y
L
RR
G
D
S
F
E
G
-------------
E
-
R
L
K
R
L
K
DKKLR
K
M
Y
I
L
-
T
D
E
E
N
---------------
S
Y
R
T
Y
L
Q
K
N
I
E
T
A
-
Y
D
D
T
--
T
G
K
D
I
------
Q
T
R
A
D
I
I
Q
G
S
--
Q
Q
N
N
A
E
E
V
F
E
------
N
P
---
E
N
----
V
E
S
Y
N
--
Y
C
K
D
-
A
A
G
K
Y
V
--
N
----
F
I
M
S
--------
N
A
Q
A
-
L
S
A
--
V
M
N
I
-------
E
N
T
D
K
T
I
S
H
H
G
V
-
T
V
S
T
L
S
----
I
A
-------
L
A
Q
K
L
G
I
T
D
P
K
K
--------
T
Q
L
L
------
T
L
G
A
L
L
H
D
------
Y
-----
G
--
H
------
H
H
SPLNLNQP
L
---
D
S
---------
M
S
--
P
E
D
L
A
L
--
W
K
K
H
---------
P
I
E
G
A
-------
Q
K
V
Q
D
--
K
K
H
F
D
Q
T
V
I
N
I
----
I
G
Q
H
E
E
--
T
I
N
------
G
T
G
P
K
G
L
R
E
K
D
M
-
D
P
L
A
V
L
V
S
S
A
N
A
M
D
R
L
I
---
T
F
E
G
V
PKAE
A
A
K
K
L
M
I
-------
D
H
V
G
K
H
P
L
Q
H
I
Q
H
L
N
D
I
L
K
GL-------------
29
Fugue
63.30
15%
4
- C3 -
2F96
1
RNT_PSEAE
A:
[19-219]
----------------------------------------------
R
H
P
M
A
R
R
F
R
G
Y
L
P
----------
V
V
V
D
V
E
T
G
G
F
--------------------
N
S
A
T
D
-------------
A
-
L
L
E
I
A
A
------
T
T
V
G
M
D
E
K
G
F
---------------
L
F
P
E
H
T
Y
F
F
R
I
E
P
-
F
E
G
A
--
N
I
E
P
A
------
A
L
E
F
T
----------------------------------
G
I
K
L
D
--
H
P
L
R
M
A
V
Q
E
E
A
--
A
----
L
T
E
I
--------
F
R
G
I
-
R
K
A
--
L
K
A
N
-------
G
C
K
R
A
I
L
V
G
H
N
-----------------------------------------------------
S
S
F
D
L
G
------
F
-----
L
--
N
------
A
A
--------
V
---
A
R
---------
T
G
--
I
K
R
N
P
F
--
H
P
F
S
---------
S
F
D
T
A
-------
T
L
A
G
L
--
A
Y
--
G
Q
T
V
L
A
K
----
A
C
Q
A
A
G
M
-
E
F
D
------
N
R
E
A
H
S
--------
A
R
Y
D
T
E
K
T
A
E
L
F
C
G
I
V
---
N
R
W
K
E
M
---
G
G
W
---------------------------------------------
9
PsiBlast_PDB
53.94
23%
31
- C3 -
4EQ9
1
?
A:
[112-221]
-------------------------------------------------------------------------------------------------------
D
-------------
I
-
G
G
K
S
T
E
------
V
V
Q
A
-
T
T
S
A
K
---------------
Q
L
E
A
Y
N
A
E
H
T
D
N
P
-
T
I
L
N
--
Y
T
K
A
D
------
F
Q
Q
I
M
V
R
L
S
D
--
G
Q
F
D
Y
K
I
F
D
K
I
G
V
E
T
V
I
K
---
N
Q
----
G
L
D
N
L
--
K
V
I
E
-
L
P
S
D
Q
Q
--
P
Y
V
Y
P
L
L
A
Q
--------
G
Q
D
E
-
L
K
S
--
F
V
D
K
-------
R
I
K
E
L
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
53.51
28%
-4
- C3 -
4QG5
1
?
A:
[72-149]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-
L
K
V
--
S
A
A
N
-------
G
V
R
C
V
W
V
G
Q
H
G
L
L
S
T
P
A
V
S
----
T
M
-------
V
R
R
R
R
D
A
D
G
R
K
A
--------
T
G
A
F
I
LTASH
N
P
G
G
P
D
A
D
----------------------
F
G
--------
I
---
K
Y
---------
N
S
--
E
N
G
G
P
A
--
P
E
K
L
---------
T
S
-------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
48.24
38%
28
- C3 -
3VWO
1
?
A:
[14-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
--
A
Q
S
L
-------
G
V
P
A
H
F
L
V
A
Q
A
A
L
E
T
G
W
G
K
----
S
Q
-------
I
R
N
---
K
D
G
T
P
S
--------
Y
N
L
F
------
N
I
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
45.69
28%
29
- C3 -
4ANR
1
?
A:
[150-233]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
--------
L
R
E
F
-
L
L
L
--
A
R
E
Q
-------
Q
V
D
P
L
S
L
T
G
S
Y
A
G
A
M
G
L
P
Q
FM
P
S
S
F
-------
R
A
Y
A
V
D
F
D
G
D
G
H
--------
I
N
I
W
---------
S
D
P
T
D
------
A
-----
I
--
G
------
S
V
--------
A
---
S
Y
---------
F
K
--
Q
H
G
W
V
T
--
G
E
P
V
---------
V
S
-------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
43.88
25%
66
- C3 -
1YWM
2
BCA_STRA1
A:
[102-172]
----------------------------------------------------------------------------------------------
L
---
P
H
V
K
T
D
-------------
G
-
Q
I
D
I
V
S
------
V
A
L
T
-
I
Y
D
S
T
---------------
T
L
R
D
K
I
E
E
V
R
T
N
A
-
N
D
P
K
--
W
T
E
E
S
------
R
T
E
V
L
T
G
L
D
T
I
-
K
T
D
I
D
N
N
P
K
T
Q
T
D
I
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
43.66
30%
69
- C1 -
2YGT
2
?
A:
[11-95]
---------------------------------------------------------------------------------------------------------------------
I
R
K
E
E
N
G
N
------
V
T
I
I
-
T
Q
N
N
K
---------------
Q
I
R
K
Y
S
S
T
D
S
A
T
T
-
K
S
N
S
K
I
T
V
D
A
S
F
V
D
D
KF
S
S
E
M
T
T
I
I
S
L
--
K
G
F
I
P
S
G
R
K
I
F
A
---
L
S
K
---
Y
R
----
G
V
M
R
W
--
P
I
K
Y
-
M
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
43.23
36%
32
- C3 -
3K3T
-
?
A:
[15-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
--
A
Q
S
L
-------
G
V
P
A
H
F
L
V
A
Q
A
A
L
A
T
G
W
G
K
----
S
Q
-------
I
R
N
K
---
D
G
T
P
S
--------
Y
N
L
F
------
N
I
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
43.16
24%
39
* C1 *
4LM8
7
?
A:
[407-502]
------------------------------------------------------------------------------------------------------------------------------------
T
I
N
-
D
A
G
K
-----------------
L
V
Y
T
T
T
K
D
L
K
L
G
-
Q
N
G
A
--
D
S
D
T
A
------
F
S
F
V
G
W
S
M
C
S
S
E
G
K
F
V
D
C
A
D
P
A
F
D
G
V
D
V
T
K
---
Y
T
----
G
M
K
A
D
--
L
A
F
A
-
T
L
S
G
K
A
--
P
----
S
T
R
H
--------
V
D
S
V
N
M
T
A
--
C
A
N
C
-------
H
T
A
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
42.63
38%
35
- C3 -
2ZYC
-
?
A:
[15-65]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
A
--
A
Q
S
L
-------
G
V
P
A
H
F
L
V
A
Q
A
A
L
E
T
G
W
G
K
----
S
Q
-------
I
R
N
---
K
D
G
T
P
S
--------
Y
N
L
F
------
N
I
K
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
41.89
13%
21
- C3 -
1QUS
-
MLTB_ECOLI
A:
[91-130]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
V
V
--
F
----
W
N
Q
Y
--------
E
D
A
L
-
N
R
A
--
W
Q
V
Y
-------
G
V
P
P
E
I
I
V
G
I
I
G
V
E
T
R
W
G
R
----
V
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
39.69
18%
65
- C3 -
1QSA
3
SLT_ECOLI
A:
[452-484]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
--------
N
D
L
F
-
K
R
Y
--
T
S
G
K
-------
E
I
P
Q
S
Y
A
M
A
I
A
R
Q
E
S
A
W
N
P
----
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
36.56
33%
-10
- C3 -
4TWB
-
KPRS_SULSO
A:
[40-94]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
P
S
-
S
I
R
D
E
E
--
V
----
L
L
V
Q
--------
T
T
D
Y
------
P
Q
D
K
-------
H
L
I
E
L
F
L
I
A
E
T
I
R
D
L
G
A
K
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
36.54
10%
88
- C3 -
1JUG
-
LYSC1_TACAC
A:
[10-42]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
N
L
-
V
A
Q
GM
N
G
Y
Q
-------
H
I
T
L
P
N
W
V
C
T
A
F
H
E
S
S
Y
N
T
----
R
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
35.28
18%
45
- C3 -
3GXR
1
?
A:
[44-76]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
K
Y
--------
K
S
F
I
-
N
N
V
--
A
K
K
H
-------
V
V
D
P
A
V
I
A
A
I
I
S
R
E
S
R
A
G
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------