@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : jhp_0112: (2015-12-12 )
MYRRLLLNLFCMVFLQACLKPMSDPKAEKVDSQVQCGFGSKDC
Atome Classification :
(18 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........----.10.....---..---.20........30-----.------.-..-....40..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYRRLLLN----LFCMVFLQ---AC---LKPMSDPKAEKVD-----S------Q-VQ-CGFGSKDC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
80.14
32%
-158
- C10 -
4Q71
7
?
A:
[3-990]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MPNIPPPFTAPYAPD
D
A
E
I
A
A
R
L
L
P
A
S
HLS
P
P
Q
E
A
R
I
H
R
T
A
T
R
L
I
E
A
I
R
KRLGG
V
E
D
M
L
R
E
F
A
L
S
T
K
E
G
L
A
L
M
V
L
A
E
---
A
L
---
L
R
V
---
P
D
A
R
T
A
D
-----
Q
------
F
-
I
E
-
D
K
L
G
E
G
D
F
I
H
H
E
T
K
S
T
A
F
L
V
NASAWAR
V
I
Q
P
GETPDG
T
I
G
R
L
V
K
R
LG
A
P
A
V
R
T
A
T
R
Q
A
M
R
L
M
G
N
H
F
VLGET
I
E
Q
A
L
E
R
G
KPGQKTR
Y
S
F
DMLGEGART
A
A
D
A
R
R
Y
F
D
A
Y
A
S
A
I
E
T
I
G
K
A
AGNHALPD
R
P
G
I
S
V
K
L
S
A
L
H
PRFEAIS
R
A
R
V
M
V
E
L
V
P
Q
L
L
D
L
A
Q
R
A
K
A
H
D
L
N
F
T
V
D
A
E
E
ADR
L
E
L
S
L
D
V
I
A
A
T
L
A
DPSLKGWDG
F
G
L
A
I
Q
AYQKR
A
S
A
V
I
D
Y
V
D
A
L
A
R
A
H
D
R
K
L
M
V
R
L
V
KGAY
W
D
T
E
I
K
R
A
Q
E
R
GLDGYPVFTR
K
A
M
T
D
L
N
Y
V
A
C
A
S
K
L
L
A
L
RPR
I
F
P
Q
F
A
T
HN
A
L
T
V
A
T
V
L
E
M
A
EGSSG
F
E
F
Q
R
L
HGMG
E
A
L
Y
E
Q
L
A
K
D
H
AD
I
A
Y
R
T
Y
A
P
V
G
S
HRD
L
L
A
Y
L
V
R
R
L
L
E
N
G
ANSS
F
V
A
Q
A
A
DYRVP
V
P
A
L
L
QR
P
A
D
A
I
VRPQAAAHPRIPLPCDLFAPE
R
R
N
S
R
G
V
E
FGA
R
T
A
L
D
Q
L
L
T
D
V
K
A
EI
A
D
A
T
P
D
Q
A
H
A
A
V
A
A
A
R
A
G
F
A
G
W
S
R
TP
A
G
I
R
A
A
A
L
E
Q
A
A
H
L
L
E
S
R
S
A
H
F
I
A
L
L
Q
R
EGGKT
L
D
D
A
L
S
E
L
R
E
A
A
D
F
C
R
Y
Y
A
A
Q
G
R
K
L
FG
S
E
T
A
M
P
G
P
T
G
E
S
N
A
L
T
M
R
G
R
G
V
F
V
A
I
S
P
WNFPL
A
I
F
L
G
Q
V
T
A
A
L
M
A
G
N
S
V
V
A
K
P
A
EQT
P
R
I
A
R
E
A
V
A
L
L
H
E
A
GIPKSA
L
Y
L
V
T
G
D
G
R
I
G
A
A
L
T
A
HPDIA
G
V
V
F
T
G
S
T
E
V
A
R
S
I
N
R
A
L
A
A
KDGPI
V
P
L
I
A
E
T
G
G
I
N
A
M
I
A
D
ATAL
P
E
Q
V
A
D
W
V
V
T
S
A
FRSAGQRCSALR
L
L
F
V
Q
EDV
A
D
R
M
I
E
M
V
A
G
A
A
R
E
LKIGDPSDVATHVGPVID
V
E
A
K
Q
R
L
D
A
H
I
A
R
M
K
T
E
ARLH
F
A
G
P
A
P
EGCFV
A
P
H
I
F
E
L
TEAGQLTEEVFGP
I
L
H
V
V
R
Y
R
PEN
L
E
R
V
L
R
A
I
E
R
T
GYGL
T
L
G
V
H
S
RI
D
D
S
I
E
A
I
I
D
R
VQVG
N
I
Y
V
NRNMIGAVVGVQP
F
G
G
N
GLSGTGPKAGGPH
Y
L
A
R
F
A
T
E
Q
T
V
T
I
NTAAA
36
Fugue
70.80
23%
-120
- C10 -
1IKP
4
TOXA_PSEAE
A:
[2-606]
EEAFDLWNECAK
A
C
V
L
D
LKD
G
V
R
S
S
R
M
S
V
D
P
A
I
A
D
TN
G
Q
G
V
L
H
Y
S
M
V
L
E
GGND
A
L
K
L
A
IDNA
L
S
I
T
S
DGL
T
I
R
L
E
G
G
VEPNKPV
R
Y
S
Y
T
R
QAR
G
S
W
S
L
N
W
L
V
P
I
G
HEKPS
N
I
K
V
F
I
H
E
L
N
AGNQLSHMS
P
I
Y
T
I
E
M
G
D
E
L
L
A
K
L
A
R
D
A
T
F
F
V
R
A
H
ESNEM
Q
P
T
L
A
I
S
H
A
G
V
S
V
V
M
A
QKRW
S
E
W
A
S
GKVLCLLDQLDG
V
Y
N
Y
L
A
QQRCNLD
D
T
W
E
G
K
I
Y
R
V
LAGNPAKHDLDIKPT
V
I
S
H
R
L
H
F
P
EGG
S
L
A
A
L
T
A
H
Q
---
A
C
HLP
L
E
T
F
T
R
H
R
Q
P
R
G
A
-----
E
------
Q
-
L
E
Q
C
G
Y
P
V
Q
R
L
V
A
L
Y
L
A
A
RLSWNQ
V
D
Q
V
I
R
N
A
L
A
S
PGSGG
D
L
G
E
A
I
R
E
Q
P
E
Q
A
R
L
A
L
T
L
A
A
A
E
S
E
R
F
V
R
QGTGND
E
A
G
A
A
N
A
D
V
V
S
L
TCPVAA
G
E
C
A
G
P
ADSGD
A
L
L
E
R
N
Y
PTGAEFLGDG
G
D
V
S
F
S
TRGTQNWT
V
E
R
L
L
Q
A
H
R
Q
L
E
E
R
GYVFV
G
Y
H
G
T
F
L
E
A
A
Q
S
I
V
FG
G
V
R
A
R
S
Q
DLDAIWR
G
F
Y
I
A
GD
P
A
L
A
Y
G
Y
AQDQEPDARG
R
I
R
N
G
A
L
L
R
V
Y
V
PRSSLPG
F
Y
R
T
SLTLAAPE
A
A
G
E
V
E
R
L
I
GHPLPLRL
D
A
I
T
G
P
EEEG
G
R
L
E
T
I
L
G
W
P
L
A
E
R
T
V
V
I
P
S
A
I
P
T
D
PRNVGGDLDPSSIP
D
K
E
Q
A
I
SALPDYASQPGK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
69.45
18%
-93
- C10 -
4GOF
3
SGTA_HUMAN
A:
[1-52]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
K
R
L
A
Y
A
----
I
I
Q
F
L
H
D
Q
---
L
R
---
H
G
G
L
S
S
D
A
Q
E
S
L
E
-----
V
------
A
-
I
Q
-
C
L
E
T
A
F
G
V
TVEDSDLAL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
66.51
38%
-56
- C8 -
2XOC
2
CHFR_HUMAN
A:
[83-95]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
---
C
C
---
F
Q
P
M
P
D
R
R
V
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
Fugue
64.88
30%
-75
- C7 -
3SF4
-
INSC_HUMAN
D:
[24-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QV
D
S
V
Q
R
W
M
E
D
L
K
L
M
T
E
----
C
E
C
M
C
V
L
Q
---
A
-----
K
P
I
S
L
E
E
D
A
Q
G
D
-----
L
------
I
-
L
A
-
G
G
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
54.75
30%
10
* C9 *
3ZF6
-
?
A:
[174-206]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
L
V
---
I
V
P
I
W
T
P
E
L
K
Q
V
E
-----
E
FESVSE
R
-
G
E
-
K
G
F
G
S
C
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
53.78
23%
-76
* C10 *
3WI3
17
SLD3_YEAST
A:
[8-275]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YSD
P
K
E
Y
I
E
S
K
Y
Y
D
A
L
FSIHTPLAYFVKS
N
L
V
R
L
K
N
T
C
R
T
K
YGSDS
Y
K
I
A
Y
Q
A
M
L
Q
K
F
L
L
S
----
I
V
Q
F
K
D
R
H
D
NR
L
L
---
L
E
P
F
S
S
P
I
A
D
E
K
R
-----
K
------
N
-
C
L
-
T
K
F
V
I
Q
D
E
NKNSS
T
I
A
D
L
C
V
V
L
K
S
R
E
I
K
L
Q
I
L
L
L
L
E
I
I
G
L
N
DLDWNFRDFD
Y
C
E
Q
L
D
L
Y
L
D
R
A
C
I
L
D
I
L
L
S
S
ETG
T
I
Q
E
H
K
K
N
I
L
DKSKEAS
L
V
G
F
I
N
YVLIPYFNKKV
P
H
A
V
E
F
I
I
Q
K
L
KGPS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
47.96
20%
-37
- C1 -
2WUH
-
?
B:
[4-31]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
G
P
G
P
G
P
-----
R
------
G
-
Q
G
-
V
G
F
G
P
G
P
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
47.74
25%
13
- C10 -
2ROD
-
APR_MOUSE
B:
[17-43]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
---
L
P
P
E
F
A
A
Q
L
R
K
I
G
-----
D
------
K
-
V
Y
-
C
T
W
S
A
P
D
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
44.67
29%
52
- C6 -
3T64
-
?
A:
[141-167]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
F
T
G
E
P
L
S
F
E
L
V
E
ELDET
S
------
R
-
G
E
-
G
G
F
G
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
43.58
35%
73
- C9 -
3MDX
-
DUT_BRUA2
A:
[146-172]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
V
---
F
A
P
V
I
Q
P
K
I
E
E
R
A
-----
K
-------R
G
A
-
G
G
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
41.82
27%
34
- C9 -
3ECY
-
?
A:
[128-144]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
---
C
E
R
I
F
Y
P
Q
L
V
M
V
D
-----
K
------
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
36.52
38%
74
- C4 -
3SO2
-
?
A:
[136-143]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
G
G
Y
G
S
T
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
34.12
33%
95
- C3 -
3HZA
-
A:
[161-169]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
D
-
G
G
W
G
S
S
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
33.56
40%
55
- C5 -
3NVW
2
?
A:
[109-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
-
S
Q
-
C
G
F
C
T
P
G
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
29.63
26%
66
- C9 -
3TQZ
-
DUT_COXBU
A:
[122-141]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
---
L
V
---
V
L
P
I
L
K
A
Q
F
A
V
V
E
-----
E
FEL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
18.75
8%
-53
- C2 -
1COZ
1
TAGD_BACSU
A:
[4-15]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
I
T
Y
---
G
T
---
F
D
L
L
H
W
G
H
I
K
L
L
E
-----
R
------
A
-
K
Q
-
L
G
D
Y
L
V
V
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
14.82
19%
79
- C9 -
1DUN
-
A:
[102-120]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
---
I
L
Q
H
H
S
N
S
R
Q
P
W
D
ENKI----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------