@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0125: (2016-03-12 )
MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYVYVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARSDAFGARYPVLRERLNQEQLNFSKKSTIQFDASTIISMEKQDIGLLTSKKISEAQTVCFLNISSLDEEADIVLEKTGETSFSDNLTSLVFAKIGTNERYQMEPVGA
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........----20.......-.30...----.....-40--------.........-50.......------------.-------60....---...-.70---------....--.....-80.......--.90..--------......100.......--110.......-120.......----130--------.......140----.......-.150.......160.---......170.-.....---------.180.......-190--------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKLD
L
W
K
W
E
M
L
LQ
G
R
E
FRN----KTND
N
W
Q
K
L
-
M
D
W
S
D
F
----
I
S
T
G
L
-
S
---------
A
I
Y
V
Y
V
NKA-DATLNNKI
D
------------
T
-------
V
D
K
A
V
N
---
A
R
V
-
N
E
----------
L
I
S
G
--
T
E
Q
L
S
-
E
V
V
D
ARSDA--FGAR
Y
--------
P
V
L
R
E
RL
N
Q
E
Q
LNFSK--K
S
T
I
Q
FD
A
S
T
-
I
I
S
M
E
K
QDI
G
----
L
L
T
--------SKKISEA
Q
-
T
----
V
C
F
L
NIS-SLDEEA
D
I
V
L
EKTGE---TSFSD
N
L
T
S
L
-
V
F
A
KI---------GTNE
R
Y
Q
MEPV-GA---------------------------------------------
44
Fugue
72.56
19%
19
- C8 -
1DIO
3
?
A:
[1-551]
MRS
K
R
F
E
A
L
A
K
RPVNQ
D
G
F
V
K
E
WIEEGFIAMESPNDPK
P
S
I
K
I
V
NGAVTELDGKPVSDFD
L
I
D
H
F
I
A
R
YGINLNR
A
E
E
V
M
A
MD
S
V
K
L
A
N
M
L
C
DPNVK
R
S
E
I
V
P
L
T
T
A
MT
P
A
K
I
V
E
V
V
S
H
MN
V
V
E
M
M
M
A
M
Q
K
M
RARR
T
P
S
Q
Q
A
H
V
T
N
VKDN
P
V
Q
I
A
A
D
A
A
E
G
A
W
R
GFD
E
Q
E
T
T
V
AVARY
A
P
F
N
A
I
A
L
L
V
G
S
Q
V
G
RPG
V
L
T
Q
C
S
L
E
E
A
T
E
L
K
L
G
M
L
GHTCYAETISVYGT
E
P
V
F
T
D
G
DDT
P
W
S
K
G
F
L
A
S
S
Y
A
S
R
G
L
K
M
R
F
T
S
G
S
G
S
E
V
Q
M
GYAEGKS
M
L
Y
L
E
A
R
C
I
Y
I
T
K
A
A
GVQGLQNGSVSC
I
G
V
P
S
A
V
PS
G
I
R
A
V
L
A
E
N
L
I
C
S
S
L
D
L
E
C
A
S
S
N
D
Q
T
F
T
H
S
D
M
R
----
R
T
A
R
L
L
M
Q
F
-
L
P
G
T
D
F
----
I
S
S
G
Y
-
S
---------
A
V
P
N
Y
D
N
M
F
-
A
G
S
N
E
D
A
E
D
------------
F
-------
D
D
Y
N
V
I
---
Q
R
D
-
L
K
----------
V
D
G
G
L
R
P
V
R
E
E
-
D
V
I
A
I
R
N
K
A
--
A
R
A
L
Q
--------
A
V
F
A
G
------
M
G
L
P
P
--
I
T
D
E
E
V
E
A
A
T
-
Y
A
H
G
S
K
D
M
P
E
----
R
N
I
--------
V
E
D
I
K
F
A
Q
-
E
----
I
I
N
K
N
R
N
---
G
L
E
V
V
K
A
L
A
Q
G
G
F
---
T
D
V
A
Q
D
M
L
N
I
-
Q
K
A
K
L
---------
T
G
----
D
Y
L
H
T
-
S
A
I
I
V
G
DG
Q
V
L
S
AVNDVNDYAGPAT
G
Y
R
L
Q
G
E
R
W
E
E
I
K
NIPGALDPN
36
Fugue
68.36
14%
-53
* C8 *
1Y7P
3
Y1403_ARCFU
A:
[4-219]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------L
R
G
L
R
I
I
A
E
N
K
I
G
V
L
R
D
L
T
T
I
I
----
A
N
I
T
F
A
Q
T
F
-
L
I
K
H
G
E
-----
H
E
G
K
-
A
---------
L
I
Y
F
E
I
E
G
G
D
F
E
K
I
L
E
R
V
K
------------
T
-------
F
D
Y
I
I
E
---
I
E
E
-
E
E
S
FERVF
G
K
R
V
I
I
L
G
--
G
G
A
L
V
-
S
Q
V
A
I
G
A
I
S
--
E
A
D
R
H
--------
N
L
R
G
E
R
I
S
V
D
T
M
P
V
V
G
--
E
E
E
I
A
E
A
V
K
A
-
V
S
R
L
H
R
A
E
V
L
----
V
L
A
G
G
I
M
G
G
K
I
T
E
E
V
K
K
L
R
-
K
S
G
I
R
V
I
S
L
S
M
F
G
S
V
P
D
V
A
D
V
V
I
S
D
---------
P
V
M
A
G
T
L
-
A
V
M
H
I
---------
S
E
K
A
K
F
D
L
D
R
V
K
G
R
---------------------------------------------
35
Fugue
68.36
22%
-39
* C9 *
2ABO
-
?
A:
[6-136]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
T
-------------------
Y
W
A
T
L
----
I
T
A
F
L
-
K
---------
T
V
----------
S
K
V
E
E
L
D
------------
C
-------
V
D
S
A
V
L
---
V
D
V
-
S
K
----------
I
I
T
L
--
T
Q
E
F
R
-
R
H
Y
D
--------------------
S
V
Y
R
A
D
Y
G
P
A
L
K
N
W
K
R
--------
D
L
S
K
-
L
F
T
S
L
F
V
D
V
-------------------
I
N
S
G
R
-
I
----
V
G
F
F
D
V
G
-
R
Y
V
C
E
E
--
V
L
C
P
G
S
W
---
T
E
D
H
E
L
L
N
D
C
-
M
T
H
F
F
---------
I
E
N
N
L
M
N
H
F
P
L
-
E
D
---------------------------------------------
39
Fugue
66.99
20%
-4
- C9 -
1HL6
-
MGN_DROME
B:
[4-146]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
D
F
Y
L
R
Y
Y
V
----
G
H
K
G
K
----------
F
G
H
E
-
F
L
E
F
E
F
----
R
P
D
G
-------------
K
L
R
Y
A
N
N
S
-
N
-
T
M
I
R
K
E
A
------------
F
-------
V
H
Q
S
V
M
---
E
E
L
-
K
R
----------
I
I
I
D
--
S
E
I
M
Q
-
E
------------------------------
D
D
L
P
W
P
P
P
D
--
R
V
G
R
Q
---
E
L
-
E
I
V
I
G
D
E
H
I
S
----
F
T
T
--------
S
K
T
L
V
D
V
N
------------
R
-
S
K
D
P
E
G
L
R
C
F
Y
Y
--------
L
V
Q
D
L
K
C
L
-
V
F
S
L
I
---------
G
L
H
F
K
I
K
P
---------------------------------------------------
1
PsiBlast_PDB
65.35
31%
-23
- C7 -
1JD9
-
AMY_PSEHA
A:
[338-427]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
S
Y
I
A
G
G
V
D
F
R
N
----
N
T
A
D
N
W
-
A
V
-
T
N
W
W
D
N
TNN
Q
I
S
F
G
R
G
S
---------
S
G
H
M
A
I
N
K
E
-
D
S
T
L
T
A
T
V
Q
------------
T
DMA----
S
G
Q
Y
C
N
---
V
L
K
-
G
E
----------
L
S
A
D
--
A
K
S
C
S
G
E
V
I
T
V
N
S
D
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
64.38
31%
-26
- C7 -
1G9H
-
AMY_PSEHA
A:
[338-427]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
S
Y
I
A
G
G
V
D
F
R
N
----
N
T
A
D
N
W
-
A
V
-
T
N
W
W
D
N
TNN
Q
I
S
F
G
R
G
S
---------
S
G
H
M
A
I
N
K
E
-
D
S
T
L
T
A
T
V
Q
------------
T
DMA----
S
G
Q
Y
C
N
---
V
L
K
-
G
E
----------
L
S
A
D
--
A
K
S
C
S
G
E
V
I
T
V
N
S
D
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
64.19
31%
-30
- C7 -
1L0P
-
AMY_PSEHA
A:
[338-427]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
S
Y
I
A
G
G
V
D
F
R
N
----
N
T
A
D
N
W
-
A
V
-
T
N
W
W
D
N
TNN
Q
I
S
F
G
R
G
S
---------
S
G
H
M
A
I
N
K
E
-
D
S
T
L
T
A
T
V
Q
------------
T
DMA----
S
G
Q
Y
C
N
---
V
L
K
-
G
E
----------
L
S
A
D
--
A
K
S
C
S
G
E
V
I
T
V
N
S
D
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
63.07
32%
-11
- C7 -
4XSG
1
?
B:
[67-138]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
D
P
T
M
K
K
K
I
E
------------
S
-------
L
D
K
A
L
N
RKE
A
K
V
-
N
D
----------
N
I
K
-----------
V
Y
R
G
D
D
A
WI
F
G
K
E
Y
DNSIIKNG
K
V
D
R
E
K
F
K
E
I
Q
K
K
F
Q
G
--
K
T
T
T
E
F
----------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
62.82
31%
-27
- C7 -
1JD7
-
AMY_PSEHA
A:
[338-427]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
S
Y
I
A
G
G
V
D
F
R
N
----
N
T
A
D
N
W
-
A
V
-
T
N
W
W
D
N
TNN
Q
I
S
F
G
R
G
S
---------
S
G
H
M
A
I
N
K
E
-
D
S
T
L
T
A
T
V
Q
------------
T
DMA----
S
G
Q
Y
C
N
---
V
L
K
-
G
E
----------
L
S
A
D
--
A
K
S
C
S
G
E
V
I
T
V
N
S
D
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
62.59
32%
-6
- C7 -
5BWM
2
?
B:
[67-138]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
D
P
T
M
K
K
K
I
E
------------
S
-------
L
D
K
A
L
N
RKE
A
K
V
-
N
D
----------
N
I
K
-----------
V
Y
R
G
D
D
A
WI
F
G
K
E
Y
DNSIIKNG
K
V
D
R
E
K
F
K
E
I
Q
K
K
F
Q
G
--
K
T
T
T
E
F
----------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
62.57
31%
-28
- C7 -
1G94
-
AMY_PSEHA
A:
[338-427]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
S
Y
I
A
G
G
V
D
F
R
N
----
N
T
A
D
N
W
-
A
V
-
T
N
W
W
D
N
TNN
Q
I
S
F
G
R
G
S
---------
S
G
H
M
A
I
N
K
E
-
D
S
T
L
T
A
T
V
Q
------------
T
DMA----
S
G
Q
Y
C
N
---
V
L
K
-
G
E
----------
L
S
A
D
--
A
K
S
C
S
G
E
V
I
T
V
N
S
D
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.02
31%
-30
- C7 -
1KXH
-
AMY_PSEHA
A:
[338-427]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
S
Y
I
A
G
G
V
D
F
R
N
----
N
T
A
D
N
W
-
A
V
-
T
N
W
W
D
N
TNN
Q
I
S
F
G
R
G
S
---------
S
G
H
M
A
I
N
K
E
-
D
S
T
L
T
A
T
V
Q
------------
T
DMA----
S
G
Q
Y
C
N
---
V
L
K
-
G
E
----------
L
S
A
D
--
A
K
S
C
S
G
E
V
I
T
V
N
S
D
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
60.93
32%
-9
- C7 -
4XSH
2
?
B:
[67-138]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-
D
P
T
M
K
K
K
I
E
------------
S
-------
L
D
K
A
L
N
RKE
A
K
V
-
N
D
----------
N
I
K
-----------
V
Y
R
G
D
D
A
WI
F
G
K
E
Y
DNSIIKNG
K
V
D
R
E
K
F
K
E
I
Q
K
K
F
Q
G
--
K
T
T
T
E
F
----------------------------------------------------------------------------------------------------------------------------------------------------------
41
Fugue
60.15
12%
-27
- C4 -
1AK4
-
POL_HV1N5
C:
[401-545]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
I
V
Q
N
L
Q
G
Q
M
V
H
Q
A
I
S
P
R
T
L
N
A
W
V
K
V
-
V
E
E
K
A
F
-----
S
P
E
V
-
I
---------
P
M
F
S
A
L
------
S
E
G
A
T
P
Q
------------
D
-------
L
N
T
M
L
N
----
T
V
-
G
G
----------
H
Q
A
A
--
M
Q
M
L
K
-
E
T
I
N
E
E
A
A
E
--
W
D
R
L
H
--------
P
-----
V
H
A
G
P
--
I
A
P
--
G
Q
M
R
E
P
R
G
S
D
-
I
A
G
T
-----------------------------------------
T
-
S
T
L
Q
E
Q
I
G
W
M
T
H
N
P
P
---
I
P
V
G
E
I
Y
K
R
W
-
I
I
L
G
L
---------
N
K
I
V
R
M
Y
----------------------------------------------------
42
Fugue
58.03
17%
-26
- C3 -
4GL6
2
?
A:
[5-241]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
I
S
I
K
I
E
T
Y
L
Q
E
E
Y
G
E
E
F
E
V
----
L
S
W
N
Q
P
K
L
L
P
S
D
N
G
A
I
----
Y
A
T
C
I
-
S
KNDPK
H
P
F
E
G
S
Y
F
N
P
E
E
P
-
N
S
E
I
E
I
I
Y
D
G
Y
G
Q
R
L
L
A
K
Q
M
E
S
M
------
I
E
E
A
I
S
---
Q
A
A
E
N
Y
----------
Y
I
Q
G
--
D
I
I
I
P
-
E
E
W
Q
D
I
P
V
E
--
E
I
S
Q
W
--------
K
N
Y
V
D
L
C
N
Q
S
N
S
D
Y
K
T
L
G
S
A
W
V
Y
I
D
A
S
T
M
K
G
K
T
D
E
E
E
Y
Q
M
Y
E
E
V
Y
R
--------
D
K
L
G
G
Q
A
L
L
Y
----
V
Y
Y
L
D
H
K
-
S
F
E
K
A
E
K
I
L
E
I
F
T
S
G
DEG
S
N
F
E
D
I
I
E
G
Q
P
Y
F
G
T
I
MRYGSDKFD
D
N
L
E
I
F
K
A
A
K
Q
-
G
K
---------------------------------------------
38
Fugue
56.25
23%
24
- C5 -
1V74
1
A:
[1-107]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
D
P
L
D
------------
S
GRFS
R
K
Q
L
D
K
K
Y
K
---
H
A
G
-
D
F
----------
G
I
S
D
--
T
K
K
N
R
-
E
T
L
T
K
F
R
D
A
--
I
E
E
H
L
--------
S
D
-
K
D
T
V
E
K
G
T
Y
R
R
E
K
--
G
S
K
V
Y
F
N
P
N
T
M
N
V
V
I
I
K
S
N
G
E
----
F
L
S
--------
G
W
K
I
N
P
------------------
D
A
D
N
G
R
I
Y
L
E
T
G
E
---
L
-----------------------------------------------------------------------------------
9
PsiBlast_PDB
52.39
44%
97
- C7 -
3LI2
1
?
A:
[254-289]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
-
N
A
V
K
N
N
R
V
D
------------
I
-------
V
D
R
D
V
W
---
A
R
S
-
R
G
----------
L
I
S
S
--
E
E
M
A
K
-
E
L
V
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
51.39
44%
94
- C7 -
3EIX
1
?
A:
[254-289]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
-
N
A
V
K
N
N
R
V
D
------------
I
-------
V
D
R
D
V
W
---
A
R
S
-
R
G
----------
L
I
S
S
--
E
E
M
A
K
-
E
L
V
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
51.35
44%
94
- C7 -
3LHS
1
?
A:
[254-289]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
-
N
A
V
K
N
N
R
V
D
------------
I
-------
V
D
R
D
V
W
---
A
R
S
-
R
G
----------
L
I
S
S
--
E
E
M
A
K
-
E
L
V
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
51.21
44%
91
- C7 -
3EIW
1
?
A:
[254-289]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
-
N
A
V
K
N
N
R
V
D
------------
I
-------
V
D
R
D
V
W
---
A
R
S
-
R
G
----------
L
I
S
S
--
E
E
M
A
K
-
E
L
V
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------