@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0230: (2016-03-13 )
MICQRCGENKAVIALQQLNELGKVESLYLCENCATDEALSSEKDLVKAMDTFSEVALDFLTLLQKEENTQKEVVCENCQLSFEEFLKTNRVGCPECYSAFEAQLVPIIGRVQNGYKKHIGKVPAEVERAEGVQNEISRLQEKLAKLVKNEEFEEAAVVRDEIKALKAGGEDK
Atome Classification :
(20 SA)
------------------------------------------------......---...10.......--.20...--.....30....-.--------...40........50........60........70...-.....80....-..-------------..90...-..----...100--.......110.......120------....-..-..130.......140......----.150..----.....160.......170-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------
M
I
C
Q
RC---GEN
K
A
V
I
A
L
Q
Q
L
--
N
ELGK
V
--
E
S
L
Y
LCENCAT-D--------EALS
S
E
K
D
L
V
K
A
M
D
T
F
S
E
V
A
L
D
F
L
T
L
L
Q
KEEN
T
Q
K
E
V
V
-
C
E
N
C
Q
L
S
F
E
E
F
-
L
K
-------------TNRVG
C
P
-
E
C
----
Y
S
A
F
E
A
--
Q
L
V
P
I
I
G
R
V
QN
G
Y
K
K
H
I
G
K-------V
P
A
E
-
V
E
-
R
AE
G
V
Q
N
E
I
S
R
L
Q
E
K
L
A
K
L
VK----N
E
E
F
E
E
----
A
A
V
V
R
D
E
I
K
A
L
KAGGEDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
74.13
26%
-39
- C4 -
3LPX
-
?
A:
[197-316]
-----------------------------------------------------------------------------------------------------------------------------------------
L
-
I
D
N
S
E
L
T
F
E
E
I
-
L
E
H
I
P
G
P
D
F
PT
A
G
I
I
S
G
R
A
G
I
E
-
E
A
----
Y
R
T
G
R
G
--
K
-
I
K
I
R
A
R
A
S
I
D
V
H
E
T
T
G
K
E
T
I
I
V
HE
L
P
Y
Q
-
V
N
-
K
A
--------
R
L
I
E
K
M
A
E
L
V
K
----
D
K
R
L
E
G
----
I
S
A
L
R
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
56
Fugue
70.72
18%
14
- C4 -
4UJ5
1
?
C:
[23-194]
-----------------------------------------------------------------
Q
P
I
V
--
K
D
C
K
E
A
--
D
L
S
L
Y
N
E
F
R
L
W
-
K
--------
D
E
P
T
M
D
R
T
C
P
F
L
D
K
I
Y
Q
E
D
I
F
P
C
L
T
F
S
K
S
E
L
A
S
A
V
L
E
A
-
V
E
N
N
T
L
S
I
E
P
V
G
L
Q
-------------
P
I
R
F
V
K
A
-
E
C
GGPK
K
C
A
L
T
G
--
Q
S
K
S
C
K
H
R
I
K
L
G
D
S
S
N
Y
Y
Y
-------
I
S
P
F
-
C
R
Y
R
I
T
S
V
C
N
F
F
T
Y
I
R
Y
I
Q
Q
G
L
V
K
QQD
V
D
Q
M
F
W
E
----
V
M
Q
L
R
K
E
M
S
L
A
K
L
G
Y
F
K
E
E------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
61
Fugue
66.61
20%
-6
- C4 -
4FPR
-
?
A:
[1-130]
-----------------------------------------------A
Y
V
C
R
E
A
S
I
S
G
E
I
R
---------------------
Y
P
Q
G
T
C
P
T
K
T
--------
E
A
L
N
D
C
N
K
V
T
K
G
L
I
D
F
S
Q
S
H
Q
R
A
W
G
I
-----
D
M
T
A
K
V
Q
-
C
A
P
C
K
--------
T
-------------
T
D
P
W
D
V
V
-
L
C
----
T
C
K
I
T
A
--
H
R
Y
----------
R
E
F
V
P
K
-------
I
P
Y
S
S
F
S
-
S
A
P
G
V
I
F
R
Q
E
T
G
L
D
H
D
P
E
W
V
V
----
N
M
K
----------
A
R
T
R
G
C
D
H
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
65.32
30%
-24
- C4 -
5BN4
1
?
A:
[486-560]
---------------------------------------------------------------------------------------------------------------------------------------------------
E
G
F
-
L
Q
-------------
Q
D
A
F
D
E
N
-
D
S
----
Y
S
P
L
E
K
T
I
E
L
M
R
I
I
H
K
Y
Y
V
T
V
K
Q
L
L
G
K
-------
I
P
L
E
-
E
I
-
E
Q
K
G
I
H
E
K
I
I
K
L
R
Y
K
S
L
K
---------
E
F
----------
R
E
E
I
K
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
64.96
30%
-20
- C4 -
5BN5
-
?
A:
[486-560]
---------------------------------------------------------------------------------------------------------------------------------------------------
E
G
F
-
L
Q
-------------
Q
D
A
F
D
E
N
-
D
S
----
Y
S
P
L
E
K
T
I
E
L
M
R
I
I
H
K
Y
Y
V
T
V
K
Q
L
L
G
--------
I
P
L
E
-
E
I
-
E
Q
K
G
I
H
E
K
I
I
K
L
R
Y
K
S
L
K
---------
E
F
----------
R
E
E
I
K
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
64.38
30%
-16
- C4 -
5BN3
1
?
A:
[486-560]
---------------------------------------------------------------------------------------------------------------------------------------------------
E
G
F
-
L
Q
-------------
Q
D
A
F
D
E
N
-
D
S
----
Y
S
P
L
E
K
T
I
E
L
M
R
I
I
H
K
Y
Y
V
T
V
K
Q
L
L
G
--------
I
P
L
E
-
E
I
-
E
Q
K
G
I
H
E
K
I
I
K
L
R
Y
K
S
L
K
---------
E
F
----------
R
E
E
I
K
A
I
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
62.53
33%
-16
- C4 -
1E52
-
UVRB_ECOLI
A:
[21-60]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
Q
Q
K
I
H
E
L
E
G
L
M
M
Q
H
A
Q
----
N
L
E
F
E
E
----
A
A
Q
I
R
D
Q
L
H
Q
L
R
E
L
F
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
63
Fugue
58.65
15%
11
- C3 -
2QKD
3
ZPR1_MOUSE
A:
[11-404]
----------------------------------------------I
E
S
L
C
M
N
C
---
Y
R
N
G
T
T
R
L
L
L
T
K
I
P
F
F
R
E
I
I
--
V
S
S
F
S
C
E
H
C
---------------
G
W
N
N
T
E
I
Q
S
A
G
R
I
Q
D
Q
G
V
R
Y
T
L
T
V
R
S
Q
E
D
M
N
R
E
V
V
K
T
D
S
A
T
T
R
I
P
E
L
-------------------------------------------------
D
F
E
I
P
A
F
S
-------
Q
K
G
A
-
L
T
-
T
V
E
G
L
I
S
R
A
I
S
G
L
E
Q
D
Q
P
T
R
R
----
A
V
E
G
A
I
----
A
E
R
I
D
E
F
I
G
K
L
K
D
L
K
Q
M
A
S
P
F
T
L
V
I
D
D
PSGN
S
F
V
E
NPHAPQKDNA
L
V
I
T
Y
Y
D
R
T
P
Q
Q
A
E
M
L
GLEEDLRNE
V
L
Q
F
N
T
N
CPECNAPAQ
T
N
M
K
L
V
Q
I
PHF
K
E
V
I
I
M
A
T
N
C
ENCG
H
R
T
N
E
V
K
S
GGAVEP
L
G
T
R
I
T
L
HITD
P
S
D
M
T
R
D
L
L
K
S
ET
C
S
V
E
IPELE
F
E
L
G
MAVLGGKFTT
L
E
G
L
L
K
D
I
R
E
L
V
TKN
P
F
T
L
GDSSNPDQS
E
K
L
Q
E
F
S
Q
K
L
G
Q
I
I
E
GK
M
K
A
H
F
I
M
N
D
PAGN
S
Y
L
Q
NVYAPEDDPE
M
K
V
E
R
Y
K
R
TFDQNEE
55
Fugue
58.52
28%
-12
- C4 -
2D7D
-
?
B:
[1-38]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
E
R
Q
K
V
V
E
Q
M
E
H
E
M
K
E
A
A
K
----
A
L
D
F
E
R
----
A
A
E
L
R
D
L
L
L
E
L
K
A
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
59
Fugue
58.17
9%
-50
- C4 -
3RBT
1
?
A:
[17-246]
V
I
P
P
P
A
LTD
K
L
R
L
YHVDMN
P
Y
G
H
R
V
L
L
V
L
E
A
K
R
I
K
Y
E
V
Y
R
L
D
PLRLP
E
W
F
R
A
K
N
---
P
R
L
K
I
P
V
L
E
I
P
T
--
D
Q
G
D
R
F
L
F
E
S
V
V
I
C
D
Y
L
D
E
-
K
Y
TRHTLHS
H
D
P
Y
V
K
A
Q
D
R
L
L
I
E
R
F
N
E
L
I
K
G
S
L
E
C
F
D
T
N
F
A
F
G
S
E
Q
I
-
I
Q
T
L
E
I
F
E
K
E
L
-
T
N
-------------
R
G
T
N
Y
F
G
G
N
R
----
P
G
M
L
D
Y
--
M
V
W
P
W
V
E
R
L
Y
L
L
R
C
V
N
D
R
K
-------
F
V
E
K
-
K
S
-
L
-------
F
P
N
F
A
D
W
G
D
Q
M
Q
L
----
D
D
I
V
K
K
H
AHS
P
Q
E
Y
F
D
Y
Y
K
N
A
R
A
H
S
M
G
Y
YL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
57
Fugue
57.22
19%
-35
* C3 *
2W4Y
4
?
A:
[1-122]
-------------------------------------------ALGD
T
L
T
I
T
L
G
---
G
S
G
G
T
A
K
V
L
R
K
I
--
N
Q
D
G
Y
T
--
S
E
Y
Y
L
P
E
T
------------------------------
S
S
S
F
R
A
K
V
R
H
T
K
E
S
V
K
P
N
Q
V
Q
-
Y
E
R
H
N
V
E
F
T
E
T
-
V
-------------------------------
Y
A
S
--
G
S
T
P
E
F
V
R
Q
A
Y
V
V
I
R
H
K
------------------
V
G
D
V
S
A
T
V
S
D
L
G
E
A
L
S
F
Y
L
N
----
E
A
L
Y
G
K
----
L
I
-----------
G
W
E
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
56.87
33%
-11
- C4 -
1E52
-
UVRB_ECOLI
A:
[13-56]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
M
D
-
M
S
--
P
K
A
L
Q
Q
K
I
H
E
L
E
G
L
M
M
Q
H
A
Q
----
N
L
E
F
E
E
----
A
A
Q
I
R
D
Q
L
H
Q
L
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
53.26
34%
-42
- C4 -
4CKK
-
?
A:
[232-268]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
E
-------
I
P
Y
Q
-
V
N
-
K
A
--------
R
L
I
E
K
I
A
E
L
V
K
----
E
K
R
V
E
G
----
I
S
A
L
R
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
51.85
34%
-30
- C4 -
2Y3P
-
GYRA_ECOLI (first)
A:
[260-298]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
E
-------
I
P
Y
Q
-
V
N
-
K
A
--------
R
L
I
E
K
I
A
E
L
V
K
----
E
K
R
V
E
G
----
I
S
A
L
R
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
51.43
34%
-40
- C4 -
3NUH
-
GYRA_ECOLI
A:
[261-308]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
E
-------
I
P
Y
Q
-
V
N
-
K
A
--------
R
L
I
E
K
I
A
E
L
V
K
----
E
K
R
V
E
G
----
I
S
A
L
R
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.11
34%
-38
- C4 -
4TMA
-
?
A:
[261-298]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
E
-------
I
P
Y
Q
-
V
N
-
K
A
--------
R
L
I
E
K
I
A
E
L
V
K
----
E
K
R
V
E
G
----
I
S
A
L
R
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
50.02
34%
-21
- C4 -
1AB4
-
GYRA_ECOLI
A:
[261-305]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
H
E
-------
I
P
Y
Q
-
V
N
-
K
A
--------
R
L
I
E
K
I
A
E
L
V
K
----
E
K
R
V
E
G
----
I
S
A
L
R
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
45.57
34%
-35
- C4 -
4RH7
-
A:
[551-637]
--------------------------------------------------------------------------------------------------------------------------------------------
Q
R
C
Q
R
S
L
N
E
F
-
L
E
-------------
E
K
R
S
A
F
P
-
R
F
----
Y
F
I
G
D
D
--
D
L
L
E
I
L
G
Q
S
T
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
43.94
25%
-25
- C4 -
3EMR
1
ECTD_VIRSA
A:
[23-97]
------------------------------------------------
I
Y
T
D
R
S
---
K
D
N
Q
A
P
I
T
K
E
Q
L
--
D
S
Y
E
K
N
--
G
F
L
Q
I
K
N
F
F
S
E
-
D
--------
E
V
I
D
M
Q
K
A
I
F
E
L
Q
D
S
I
K
D
V
A
S
D
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
HHSearch
41.15
29%
-45
- C4 -
3VRH
1
?
A:
[1-42]
------------------------------------------------
M
K
C
K
F
C
---
S
R
-
E
A
Y
I
K
I
H
Y
-----------
P
K
M
Y
L
C
E
E
H
F
K
-
E
--------
Y
F
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------