@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo1318: (2016-03-23 )
LTTIIAFIFVFGLIVFFHELGHFLFAKRAGIMVKDFSIGFGPKIFAYRKKETQYTIRLLPIGGYVRMAGEDGEEIELKPGYRVGLELTPEETVSKIIVNGKDQYVNAQPIEVSLCDLEKELFIEGYEDYDDTKKVRYQVERDALVIDGKIETMITPYDRSFNAKSLGNRAMTIFAGPLFNFILAILIFTALAFVQGGVPSTDNTLGNVLPDGAAAEAGLKKGDEVLSINGKETKSWTDIVQNVSENPGKTLDFKIERDGKTQDIDVKPATQKENGKDVGKIGVETPMDSSFTAKITNGFTQTWNWIVQIFTILGNMFTGGFSLDMLNGPVGIYTSTQQVVQYGFMTVLNWTAVLSINLGIVNLLPLPALDGGRLMFFLYELVRGKPIDPKKEGIIHFAGFALLMVLMILVTWNDIQRAFF
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.......140.......150.......160.......170.......180....---...190.......200.--.------.....210-.......-.220.......230......--.240-...-.-.-..250.......260.....------..270-----.......280-........290.......300.......310.......320.....-..330.......340.......350.......360.......370.......380.......390.......400.......410.......420
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
L
T
T
I
I
A
F
I
F
V
F
G
L
I
V
F
F
H
E
L
G
H
F
L
F
A
K
RA
G
I
M
V
K
D
FSIGFGP
K
I
F
A
Y
R
KKE
T
Q
Y
T
I
R
L
L
PIG
G
Y
V
R
MAGEDG
E
E
I
E
LKPG
Y
R
V
G
L
E
L
T
P
E
E
T
V
S
K
I
I
VNGKDQYVNAQ
P
I
E
V
S
L
C
D
L
E
K
E
L
F
I
EGYEDYDD
T
K
K
V
R
Y
Q
V
ER
D
A
L
V
IDGKI
E
T
M
ITPYDRSFN
A
K
SLGN
R
A
M
T
I
F
A
G
P
L
F
N
F
I
L
A
I
L
---
I
F
T
A
L
A
F
V
QGGVPSTDN--
T
------
L
G
NVLPD--GAAAEAG-LKKGD
E
V
L
S
INGKET
K
S
W
T
D
--
I
V
Q
N
-
V
SE-N-P-GK
T
L
D
F
K
I
ERDGKTQ
D
I
DVK------PATQK-----ENGKDVGKI--GVETPMDSS
F
T
A
KITNGF
T
Q
T
W
N
W
I
V
Q
I
F
T
I
L
G
N
MFTGG
F
S
L
D
MLN-GPV
G
I
YT
S
T
Q
Q
V
V
Q
Y
G
F
M
T
V
LN
W
T
A
V
L
S
I
NL
G
I
V
N
LLPLPALDG
G
R
L
M
F
F
L
Y
E
L
VRGKPIDPKKE
G
I
I
H
F
A
G
F
A
L
L
M
V
L
M
I
L
V
T
W
N
D
I
Q
R
A
FF
2
PsiBlast_PDB
85.56
37%
16
- C4 -
3ID4
-
RSEP_ECOLI
A:
[223-305]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
--
V
------
L
E
N
V
Q
P
N
--
S
A
A
S
K
A
G
-
L
Q
A
G
D
R
I
V
K
V
D
G
Q
P
L
T
Q
W
V
T
--
F
V
M
L
-
V
R
D
-
N
-
P
-
G
K
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
------
P
E
S
K
P
-----
G
N
G
K
A
I
G
F
V
--
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
21
PsiBlast_CBE
84.74
37%
9
- C4 -
3ID2
4
B:
[4-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
--
V
------
L
E
N
V
Q
P
N
--
S
A
A
S
K
A
G
-
L
Q
A
G
D
R
I
V
K
V
D
G
Q
P
L
T
Q
W
V
T
--
F
V
M
L
-
V
R
D
-
N
-
P
-
G
K
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
------
P
E
S
K
P
-----
G
N
G
K
A
I
G
F
V
--
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
84.54
37%
19
- C4 -
3ID3
-
RSEP_ECOLI
A:
[223-305]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
--
V
------
L
E
N
V
Q
P
N
--
S
A
A
S
K
A
G
-
L
Q
A
G
D
R
I
V
K
V
D
G
Q
P
L
T
Q
W
V
T
--
F
V
M
L
-
V
R
D
-
N
-
P
-
G
K
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
------
P
E
S
K
P
-----
G
N
G
K
A
I
G
F
V
--
G
A
E
-----------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
84.08
37%
6
- C4 -
3ID2
4
RSEP_ECOLI
A:
[4-86]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
--
V
------
L
E
N
V
Q
P
N
--
S
A
A
S
K
A
G
-
L
Q
A
G
D
R
I
V
K
V
D
G
Q
P
L
T
Q
W
V
T
--
F
V
M
L
-
V
R
D
-
N
-
P
-
G
K
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
------
P
E
S
K
P
-----
G
N
G
K
A
I
G
F
V
--
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
79
Fugue
82.33
21%
-47
- C4 -
2PZD
2
HTRA2_HUMAN
A:
[5-113]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
Y
I
G
V
M
M
L
T
L
S
P
S
I
L
A
E
L
Q
L
R
E
P
S
F
P
D
V
Q
H
G
V
L
------
I
H
K
V
I
L
G
--
S
P
A
H
R
A
G
-
L
R
P
G
D
V
I
L
A
I
G
E
Q
M
V
Q
N
A
E
D
--
V
Y
E
A
-
V
R
T
-----
Q
S
Q
L
A
V
Q
I
R
R
G
R
E
T
L
T
L
Y
V
T
------
P
E
V
T
G
-----
W
T
M
F
W
V
-------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
79.54
35%
27
- C4 -
3OU0
1
DEGP_ECOLI
A:
[293-372]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
P
N
--
S
S
A
A
K
A
G
-
I
K
A
G
D
V
I
T
S
L
N
G
K
P
I
S
S
F
A
A
--
L
R
A
Q
-
V
G
T
-
M
-
P
V
G
S
K
L
T
L
G
L
L
R
D
G
K
Q
V
N
V
N
L
E
------
L
Q
Q
S
S
-----
Q
N
Q
V
D
S
S
S
I
FN
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
79.10
35%
25
- C4 -
3CS0
1
DEGP_ECOLI
A:
[293-372]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
P
N
--
S
S
A
A
K
A
G
-
I
K
A
G
D
V
I
T
S
L
N
G
K
P
I
S
S
F
A
A
--
L
R
A
Q
-
V
G
T
-
M
-
P
V
G
S
K
L
T
L
G
L
L
R
D
G
K
Q
V
N
V
N
L
E
------
L
Q
Q
S
S
-----
Q
N
Q
V
D
S
S
S
I
FN
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
54
HHSearch
78.64
35%
5
- C4 -
2ZPM
-
RSEP_ECOLI
A:
[224-306]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
V
------
L
E
N
V
Q
P
N
--
S
A
A
S
-
A
G
-
L
Q
A
G
D
R
I
V
-
V
D
G
Q
P
L
T
Q
W
V
T
--
F
V
M
L
-
V
R
D
-
N
-
P
-
G
-
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
------
P
E
S
-
P
-----
G
N
G
-
A
I
G
F
V
--
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
78.64
35%
5
- C4 -
2ZPM
-
RSEP_ECOLI
A:
[224-306]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
--
V
------
L
E
N
V
Q
P
N
--
S
A
A
S
-
A
G
-
L
Q
A
G
D
R
I
V
-
V
D
G
Q
P
L
T
Q
W
V
T
--
F
V
M
L
-
V
R
D
-
N
-
P
-
G
-
S
L
A
L
E
I
E
R
Q
G
S
P
L
S
L
T
L
I
------
P
E
S
-
P
-----
G
N
G
-
A
I
G
F
V
--
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
78.50
35%
30
- C4 -
3MH7
1
DEGP_ECOLI
A:
[293-372]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
P
N
--
S
S
A
A
K
A
G
-
I
K
A
G
D
V
I
T
S
L
N
G
K
P
I
S
S
F
A
A
--
L
R
A
Q
-
V
G
T
-
M
-
P
V
G
S
K
L
T
L
G
L
L
R
D
G
K
Q
V
N
V
N
L
E
------
L
Q
Q
S
S
-----
Q
N
Q
V
D
S
S
S
I
FN
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
52
HHSearch
76.17
30%
11
* C4 *
3WKM
-
Y1964_AQUAE
A:
[96-177]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
P
--
V
------
V
G
G
V
K
K
G
--
S
P
A
D
Q
V
G
-
I
K
P
G
D
L
I
L
E
V
N
G
K
K
I
N
T
W
Y
E
--
L
V
E
E
-
V
R
K
-
S
-
Q
-
G
K
A
I
K
L
K
I
L
R
N
G
K
M
I
E
K
E
L
I
------
P
A
K
D
P
-----
K
--
T
G
T
Y
F
I
--
G
L
F
P
----------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
75.39
35%
28
- C4 -
3MH6
-
DEGP_ECOLI
A:
[293-372]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
P
N
--
S
S
A
A
K
A
G
-
I
K
A
G
D
V
I
T
S
L
N
G
K
P
I
S
S
F
A
A
--
L
R
A
Q
-
V
G
T
-
M
-
P
V
G
S
K
L
T
L
G
L
L
R
D
G
K
Q
V
N
V
N
L
E
------
L
Q
Q
S
S
-----
Q
N
Q
V
D
S
S
S
I
FN
G
I
E
-----------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
72.60
32%
30
- C4 -
3WKM
-
Y1964_AQUAE
A:
[90-169]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
A
P
L
V
K
P
--
V
------
V
G
G
V
K
K
G
--
S
P
A
D
Q
V
G
-
I
K
P
G
D
L
I
L
E
V
N
G
K
K
I
N
T
W
Y
E
--
L
V
E
E
-
V
R
K
-
S
-
Q
-
G
K
A
I
K
L
K
I
L
R
N
G
K
M
I
E
K
E
L
I
------
P
A
K
D
P
-----
K
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------
44
PsiBlast_CBE
70.97
32%
7
- C4 -
1IHJ
1
INAD_DROME (first)
A:
[20-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
C
I
V
R
G
E
V
K
D
S
P
N
--
T
K
T
T
G
I
F
I
K
G
I
V
P
D
--
S
P
A
H
L
C
G
R
L
K
V
G
D
R
I
L
S
L
N
G
K
D
V
R
N
S
T
E
Q
A
V
I
D
L
-
I
K
E
--------
A
D
F
K
I
E
L
E
I
Q
T
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
74
Fugue
70.87
22%
28
- C4 -
2ZPL
3
RSEP_ECOLI
A:
[3-94]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
R
P
--
V
------
V
G
E
I
A
A
N
--
S
I
A
A
E
A
Q
-
I
A
P
G
T
E
L
K
A
V
D
G
I
E
T
P
D
W
D
A
--
V
R
L
Q
M
V
D
K
-
I
-
G
-
D
E
S
T
T
I
T
V
A
P
F
G
S
D
Q
R
R
D
V
K
------
L
D
L
R
H
W
A
F
E
P
D
K
E
D
P
V
S
S
L
--
G
I
R
P
R
---------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
70.58
32%
47
- C4 -
3WKL
-
Y1964_AQUAE
A:
[90-169]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
A
P
L
V
K
P
--
V
------
V
G
G
V
K
K
G
--
S
P
A
D
Q
V
G
-
I
K
P
G
D
L
I
L
E
V
N
G
K
K
I
N
T
W
Y
E
--
L
V
E
E
-
V
R
K
-
S
-
Q
-
G
K
A
I
K
L
K
I
L
R
N
G
K
M
I
E
K
E
L
I
------
P
A
K
D
P
-----
K
T
G
----------------------------------------------------------------------------------------------------------------------------------------------------
81
Fugue
68.24
12%
-15
- C5 -
4JJ0
4
?
A:
[55-235]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
G
F
V
A
P
N
V
Q
F
S
E
A
H
W
Q
G
M
E
---
A
L
P
L
S
I
E
L
K
R
K
L
K
L
P
L
D
--
L
------
E
G
L
L
I
D
E
TS
L
N
A
A
V
S
G
-
L
L
A
G
D
V
L
V
A
I
N
G
R
K
V
K
T
L
K
K
--
M
Q
K
E
-
T
R
R
V
Q
-
M
-
D
R
R
A
S
L
T
V
Y
R
K
G
R
L
L
T
L
T
L
S
E
EKNLG
L
A
Q
V
E
-----
T
A
P
M
I
L
P
G
D
--
I
M
P
H
P
Y
R
G
P
C
T
Q
C
H
A
I
G
T
T
G
H
I
T
P
D
P
D
G
I
V
L
P
P
G
P
I
R
A
G
A
K
M
P
H
R
D
R
G
P
C
A
A
C
H
A
I
I
Q
----------------------------------------------------------------------------------
43
PsiBlast_CBE
67.66
32%
-7
- C4 -
1IHJ
1
INAD_DROME
B:
[20-97]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
C
I
V
R
G
E
V
K
D
S
P
N
--
T
KTTGIF
I
K
G
I
V
P
D
--
S
P
A
H
L
C
G
R
L
K
V
G
D
R
I
L
S
L
N
G
K
D
V
R
N
S
T
E
QA
V
I
D
L
-
I
K
E
--------
A
D
F
K
I
E
L
E
I
Q
T
F
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
57
HHSearch
67.19
30%
44
- C4 -
1TE0
-
DEGS_ECOLI
A:
[281-348]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
--
V
------
V
N
E
V
S
P
D
--
G
P
A
A
N
A
G
-
I
Q
V
N
D
L
I
I
S
V
D
N
K
P
A
I
S
A
L
E
--
T
M
D
Q
-
V
A
E
I
R
-
P
-
G
S
V
I
P
V
V
V
M
R
D
D
K
Q
L
T
L
Q
V
T
------
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------
32
PsiBlast_CBE
66.66
33%
21
- C4 -
3STJ
1
DEGQ_ECOLI
B:
[270-329]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
P
G
--
S
G
S
A
K
A
G
-
V
K
A
G
D
I
I
T
S
L
N
G
K
P
L
N
S
F
A
E
--
L
R
S
R
-
I
A
T
-
T
E
P
-
G
T
K
V
K
L
G
L
L
R
N
G
K
P
L
E
V
E
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------