@TOME V2.3
(Nov 2016)

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Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
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Values color: [ Good | Correct | Middling | Bad ]Sequence color : MutatedHelixStrandConserved

Query sequence : Lmo2340: (2016-04-02 )
MKNYLSLSEEVKQAKAEGKAIVALESTIISHGMPYPQNVEMARDVEQIIRDNGAVPATIALIDGKIKIGLSDEELELFAKSSNVAKVSRRDIGYLIATKQLGATTVAATMICAELAEIGIFVTGGIGGVHRGAETTMDVSADLEELAKTNVAVVCAGAKSILDLNLTMEYLETKGVPVIGYQTDVLPAFYTRSSDVELTLRADTPEVIAESLKAKWDLQIEGGAVITNPIPEEFAMDEKVINDVIQTALKEAEENHIHGKDVTPFLLGKVKELTDGKSLEANIELVKHNALIGTQIAVAYQNI

Atome Classification :

(20 SA) ------------.........10---.........20........30........40-........-------50........60.......-----------------------------.---70........80..-......--------.90------........100.......110.......-----120..-.....130.......140-------------.......150------.........-----160.......170.......180.---......190..--.....200....-------....210.....-..220---.----..-----......230.....-..240-.......250.......260.......270...-....280-------....-----....290..---------------.....300.---------------------------------------------
(Atome) (Ident) (Tito) (Num) (Ligand) (Uniprot) ------------MKNYLSLSEE----VKQAKAEGKAIVALESTIISHGMPYPQNVEM-ARDVEQII-------RDNGAVPATIALIDGKIKI-----------------------------G---LSDEELELFAK-SS-NVAKVS--------RRD------IGYLIATKQLGATTVAATMICAELAEIG-----IFVTG-GIGGVHRGAETTMDVSAD-------------LEELAKTN--------VAVVCAGAK-----SILDLNLTMEYLETKGVPVIGYQT---DVLPAFYTRSS--DVELTL-RADTP-------EVIAESLKAKWD-LQI-----E----GG-----AVITNPIPEEFAMD-EKVIN-DVIQTALKEAEENHIHGKDVTPFLLGKVKELTD-GKSLEA--------NIEL-----VKHNALIGT---------------QIAVAYQNI---------------------------------------------
17 PsiBlast_CBE 99.4158%-101 - C4 -4GIK PSUG_ECOLI B:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAK-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
18 PsiBlast_CBE 99.3858%-104 - C4 -4GIJ PSUG_ECOLI B:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISH---FPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAK-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
1 PsiBlast_PDB 98.9658%-105 - C4 -4GIJ PSUG_ECOLI A:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAK-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG---SLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
3 PsiBlast_PDB 98.7058%-103 - C4 -4GIL PSUG_ECOLI A:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAK-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
15 PsiBlast_CBE 98.4558%-100 - C4 -4GIL PSUG_ECOLI B:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAK-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
14 PsiBlast_CBE 98.3958%-101 - C4 -4GIL PSUG_ECOLI C:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAK-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
19 PsiBlast_CBE 98.0957%-104 - C4 -4GIM PSUG_ECOLI C:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAA-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
20 PsiBlast_CBE 97.9357%-102 - C4 -4GIM PSUG_ECOLI B:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAA-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
2 PsiBlast_PDB 97.9158%-102 - C4 -4GIK PSUG_ECOLI A:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAK-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
16 PsiBlast_CBE 97.6958%-103 - C4 -4GIK PSUG_ECOLI C:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISH--PFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAK-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
4 PsiBlast_PDB 97.3757%-101 - C4 -4GIM PSUG_ECOLI A:[34-333] ----------------LQISPE----VQDALKNKKPVVALESTIISHGMPFPQNAQT-AIEVEETI-------RKQGAVPATIAIIGGVMKV-----------------------------G---LSKEEIELLGREGH-NVTKVS--------RRD------LPFVVAAGKNGATTVASTMIIAALAGIK-----VFATG-GIGGVHRGAEHTFDISAD-------------LQELANTN--------VTVVCAGAA-----SILDLGLTTEYLETFGVPLIGYQT---KALPAFFCRTS--PFDVSI-RLDSA-------SEIARAMVVKWQ-SGL-----N----GG-----LVVANPIPEQFAMP-EHTIN-AAIDQAVAEAEAQGVIGKESTPFLLARVAELTG-GDSLKS--------NIQL-----VFNNAILAS---------------EIAKEYQRL---------------------------------------------
5 PsiBlast_PDB 90.2741%-103 - C4 -4EX8 ? A:[17-312] --------------QLLEVSDE----IATALAERRPVVALESSLIT----TDPSSET-ASLIEKAV-------RGAGAVPATIGIAGGKLVV-----------------------------G---LTDSLIERFAS-TK-GIPKIS--------ARD------IGGALAGGGLGATTVAGTIVIAERAGIQ-----VFTTA-GIGGVHRRGEDTLDISPD-------------LLQFRKTK--------MTVVSGGAK-----SILDHRLTAEYLETAGVPVYGYRT---DKLAAFVVREA--DVPVT--RMDDL-------HTAARAAEAHWQ-VNG-----P----GT-----VLLTSPIDEQDAVD-EAIVE-AAIAEALAQCDQEGIVGNAVSPYLMKALARASG-GMLPKA--------GRSL-----LLSTARVAG---------------EFSAALSAV---------------------------------------------
6 PsiBlast_PDB 90.0441%-103 - C4 -4EX9 ? A:[17-312] --------------QLLEVSDE----IATALAERRPVVALESSLIT----TDPSSET-ASLIEKAV-------RGAGAVPATIGIAGGKLVV-----------------------------G---LTDSLIERFAS-TK-GIPKIS--------ARD------IGGALAGGGLGATTVAGTIVIAERAGIQ-----VFTTA-GIGGVHRRGEDTLDISPD-------------LLQFRKTK--------MTVVSGGAK-----SILDHRLTAEYLETAGVPVYGYRT---DKLAAFVVREA--DVPVT--RMDDL-------HTAARAAEAHWQ-VNG-----P----GT-----VLLTSPIDEQDAVD-EAIVE-AAIAEALAQCDQEGIVGNAVSPYLMKALARASG-GMLPKA--------GRSL-----LLSTARVAG---------------EFSAALSAV---------------------------------------------
25 HHSearch 80.1835% -96 - C4 -1VKM PSUG_THEMA A:[14-296] ---------------------I----IESRIEKGKPVVGMETTVFVHGLPRKEAIEL-FRRAKEIS-------REKGFQLAVIGILKGKIVA-----------------------------G---MSEEELEAMMR-E--GADKVG--------TRE------IPIVVAEGKNAATTVSATIFLSRRIGIE-----VVVTG-GTGGVHPG---RVDVSQD-------------LTEMSSSR--------AVLVSSGIK-----SILDVEATFEMLETLEIPLVGFRT---NEFPLFFSRKS--GRRVP--RIENV-------EEVLKIYESMKE-MEL-----E----KT-----LMVLNPVPEEYEIP-HDEIE-RLLEK-----IELEVEGKEVTPFLLKKLVEMTN-GRTLKA--------NLAL-----LEENVKLAG---------------EIAVKLKR----------------------------------------------
7 PsiBlast_PDB 78.9836% -95 - C4 -1VKM PSUG_THEMA A:[21-296] --------------------------------KGKPVVGMETTVFVHGLPRKEAIEL-FRRAKEIS-------REKGFQLAVIGILKGKIVA-----------------------------G---MSEEELEA-MM-RE-GADKVG--------TRE------IPIVVAEGKNAATTVSATIFLSRRIGIE-----VVVTG-GTGGVHPG---RVDVSQD-------------LTEMSSSR--------AVLVSSGIK-----SILDVEATFEMLETLEIPLVGFRT---NEFPLFFSRKS--GRRVP--RIENV-------EEVLKIYESMKE-MEL-----E----KT-----LMVLNPVPEEYEIP-----H-DEIERLL-EKIELEVEGKEVTPFLLKKLVEMTN-GRTLKA--------NLAL-----LEENVKLAG---------------EIAVKLKR----------------------------------------------
51 Fugue 47.1619% -22 * C5 *4N5H ? X:[1-315] --------MADEEAMLAKVQAS----WAQTAARDKARYADERVPEDVHWETEYRYEQ-SADPQQTLNLYYPAKRRNATMPTVIDIHGGGWFY-----------------------------GDRNLNRNYCRYLAS-QGYAVMGMG--------YRL------LPDVDLRGQIQDIFASLRWLSHFGPQRGFDLDHVLLTGDSAGGHLASLVACIQQSAE-------------LQELFGVSRVNFNFTLVALVCPVAE-------------PSKLPEAA----GDMS---DMAAFYLDKLSGGDQALVD-HLNFS-------QVVKGLDLPP---FML-----I----GGQNDSFYLQSQALLKVFDAN-H--VT-YTTKLWPASAGPHLKHVFNVQHWEW---------PESIET--------NLEM-----LRTFDALSK---------------QQDQAEENE---------------------------------------------
47 Fugue 42.1521% -45 - C5 -4C2E - CTPB_BACSU A:[2-436] ADSERDKAMDKIEKAYELISNEYVEKVDREKLLEGAIQGMLSTLNDPYSVYMDKQTA-KQFSDSLD-------SSFEGIGAEVGMEDGKIIIVSPFKKSPAEKAGLKPNDEIISINGESMAG---KDLNHAVLKIR-GK-KGSSVSMKIQRPGTKKQ------LSFRIKRAEIPLETVFASEKKVQGHSVG-----YIAIS-TFSE-----HTTEDFAKA-------------LRELEKKE--------IEGLVIDVRGNPGGYIQSVEEILKHFVTKDQPYIQIAERNGDKKRYFSTLTH--KKAYPV-NVITDKGSAAASEILAGALKEAGH-YDVVGDTSF----GK-----GTVQQAVPMGDGSN-IKLTL-YKWLTP----NGNWIHKKGIEPTIAIKQPDYFS-AGPLQLKEPLKVDMNNED-----VKHAQVLLKGLSFDPGREDGYFSKDMKKAVMAFQDQNKLNKTGIIDTRTAETLNQQIEKKKSDEKNDLQLQTALKSLF
46 Fugue 41.0218% -41 - C1 -3G8Q CDAT8_METKA A:[1-278] ------------MKVSLA-GQT----VDVKKILNEIPKRTVTAALLEGGEIVAVEEADDEHAERKL-------VRRHDVEGKVVFVTARP------------------------------------------CLYC-AR-ELAEAG--------VAG------VVYLGRGRGLGPYYLARSGV--EVVEVH-----PDEPL-GYDPVDR-----LDVLLT-------------FGGNPYLT--------EEDVAARVY-----CLLTGR--------------GFDA---DIAPAPENLSG--RVEIMV-TRGDP-------DEAVELLKEELPVFRI-----RRFLISG-----EFDRDELRERILEDIEPRIL-DPFAVRARIARAGAFSSSREAEVFIGDVLTSVGREVNLND--------PRTV-----VTVDVL-GP---------------RVSVGVEKR---------------------------------------------
50 Fugue 38.2815% -18 - C5 -4BVA CRYM_MOUSE A:[24-334] ----------KRAPAFLSAEEV----QDHLRSSSLLIPPLEAALANFSKGPDGGVMQ-PVRTVVPV-------AKHRGFLGVMPAYSAA-ED-----------------------------A---LTTKLVTFY---ES-HQASVL--------LFDPSNGSLLAVMDGNVITAKRTAAVSAIATKLLKPP-----GSDVL-CILGAGVQAYSHYEIFTE-------------QFSF--KE--------VRMWNRTRE-----NAEKFASTVQ----GDVRVCSSVQ---EAVT-----GA--DVIITVTMATEP-------ILFGEWVKPGAH-INA-----V----GA-----SRPDWRELDDELMR-QAVLYVDSREAALKESGDVLLSGADI-FAELGEVISGAK-PAHCEK--------TTVFKSLGMAVEDLVAAK---------------LVYDSWSSG---------------------------------------------
12 PsiBlast_PDB 35.4420% -69 - C4 -4PZ0 ? A:[18-123] -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLTGVG-----FFTSG-GEGAKEMGDKLGVQVKYDGPSEASVSGQVKYINNFINQN--------YDALMVSST-----SVDGLSQSLQRAKKKGMTVLTWDS---DVNP------K--DRSFYI-SQGTP-------DQLANLL--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------