@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1801: (2015-12-10 )
MKRIQKNILREFEMESSEQALAIWSVLSDVYDKSPWSLSQISEDLKKDSTDYFFVYNDGEVIGFLALQQLVGEVEITNIAVKKNYQGKGYAYQLMSMIADIEVPVFLEVRYSNIVAQKLYERCGFVVLGKRKNYYHDPIEGAIVMRKG
Atome Classification :
(20 SA)
.........10........20........30-..------.-----...------..----.40..-------------.....-----.--50-----......-..60.....------------.--..70-.---------........80........90....-----...-------.100-----.-----.----..-.....110.......120.......130......--.--140......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
M
K
R
I
Q
K
N
I
L
R
E
F
EMESS
E
Q
A
L
A
I
W
S
V
L
S
D
V
--YD------K-----SPW------
S
L
----
S
Q
I
S
E
-------------
D
L
KKD-----S--T
D
-----
Y
F
F
V
YN-DG
E
V
I
G
F
L
A
------------
L
--
Q
Q
L
--V---------GE
V
E
I
T
N
I
A
V
KKNYQGK
G
Y
A
Y
Q
L
M
-----
S
M
I
-------
A
D-------I-----E----V
P
-
V
F
L
E
V
R
Y
S
N
I
V
A
Q
K
L
Y
E
RC
G
F
V
V
LGKRKNYYHDP--I--E
G
A
I
V
MRKG
40
HHSearch
87.48
28%
-115
* C1 *
2CNT
2
?
A:
[3-144]
----------
T
I
S
I
L
S
T
T
D
L
P
A
A
W
Q
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Q
R
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--
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A
------------
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----
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T
F
F
G
-------------
N
Q
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N
Y
Y
P
T
A
--
Q
G
H
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D
A
I
I
M
A
L
P
51
HHSearch
83.88
24%
-107
- C1 -
3OWC
5
ATSE2_PSEAE
A:
[15-174]
----------
Q
L
V
P
F
Q
L
G
H
F
P
I
L
Q
R
W
F
A
T
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K
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PALR-
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V
G
--
R
E
R
W
N
V
V
L
M
G
L
L
7
PsiBlast_PDB
80.79
30%
-134
- C1 -
2X7B
2
Y209_SULSO
A:
[45-166]
-----------------------------------------------------------------
E
-------------
H
L
K
E
Y
-----
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--
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F
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-------
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G
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D
A
Y
L
M
A
R
P
-
46
HHSearch
79.79
19%
-110
- C1 -
3KKW
19
?
A:
[27-178]
-----------
H
R
P
A
E
T
G
D
L
E
T
V
A
G
F
P
Q
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--
D
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AI---
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D
P
D
G
--
R
R
-
V
A
L
I
Q
M
D
K
P
6
PsiBlast_PDB
77.52
30%
-140
- C1 -
4R3L
1
Y209_SULSO
A:
[44-165]
-----------------------------------------------------------------
E
-------------
H
L
K
E
Y
-----
G
--
L
A
-----
F
F
V
A
I
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-
D
N
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V
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Y
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M
P
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FSNIKQ
L
--
P
S
L
--
V
---------
R
K
G
H
V
V
S
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L
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Y
R
R
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G
I
A
T
T
L
L
E
A
S
M
K
S
M
K
-------
N
D
-------
Y
-----
N
----
A
E
E
I
Y
L
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R
V
S
N
Y
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A
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L
N
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K
K
V
K
V
L
K
G
Y
Y
A
D
G
--
E
--
D
A
Y
L
M
A
R
P
L
42
HHSearch
77.05
22%
-119
- C1 -
1TIQ
4
PAIA_BACSU
A:
[4-168]
----------
K
M
K
K
C
S
R
E
D
L
Q
T
L
Q
Q
L
S
I
E
T
--
F
N
------
D
T
FK--
E
Q
N
------
S
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----
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N
M
K
A
Y
L
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FN
T
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L
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N
M
-----
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A
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Y
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------------
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--
N
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D
--
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AQSEEMGA-
E
S
L
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R
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L
G
K
H
L
L
-----
N
K
A
-------
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I
A
L
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R
N-
K
-----
K
-----
N
-
I
W
L
G
V
W
E
K
N
E
N
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K
M
G
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A
H
S
F
Y
M
G
D
E
--
E
--
Q
T
D
L
I
M
A
K
T
55
HHSearch
76.43
26%
-132
- C1 -
2CY2
1
?
A:
[2-154]
----------
R
I
R
R
A
G
L
E
D
L
P
G
V
A
R
V
L
V
D
T
--
W
R
------
A
T
Y
RGV
V
P
E
A
F
L
E
G
L
S
Y
E
G
Q
A
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R
W
A
Q
-------------
R
L
K
T
P
-----
T
WP
G
R
-----
L
F
V
A
E
S
E
S
G
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V
V
G
F
A
A
------------
F
--
G
P
D
--
R
ASGFPG---
Y
T
A
E
L
W
A
I
Y
V
L
P
T
W
Q
R
K
G
L
G
R
A
L
F
-----
H
E
G
-------
A
R
L
L
Q
A
E
G-
Y
-----
G
-----
R
-
M
L
V
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V
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N
P
K
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R
G
F
Y
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H
L
G
G
V
L
L
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E
R
E
I
E
L
G
G
A
--
K
--
L
W
E
V
A
Y
G
F
D
12
PsiBlast_PDB
76.29
28%
-149
- C1 -
3OWC
5
ATSE2_PSEAE
A:
[46-159]
----------------------------------------
R
-----
H
P
L
------
S
L
----
E
Q
M
H
E
-------------
D
L
A
E
S
-----
R
--
R
R
PPL
R
L
L
W
S
A
C
R
-
D
D
Q
V
I
G
H
C
Q
------------
L
L
F
D
R
R
--
N
---------
G
V
V
R
L
A
R
I
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L
A
P
S
A
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G
Q
G
L
G
L
P
M
L
-----
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A
L
L
A
E
A
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AD
A
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-------
I
-----
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----
R
--
V
E
L
N
V
Y
D
W
N
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A
A
R
H
L
Y
R
R
A
G
F
R
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E
G
L
R
R
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A
T
R
V
G
--
R
--
E
R
W
N
V
V
L
M
G
54
HHSearch
76.02
20%
-120
- C1 -
2GE3
1
?
A:
[10-165]
-----------
I
K
P
I
R
A
E
H
V
E
S
F
H
R
A
L
D
A
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--
S
R
E
RKYL-
S
FL---
E
A
P
------
P
L
----
E
A
V
R
A
-------------
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V
L
D
M
I
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N
--
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--
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-----
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F
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------------
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--
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--
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RATR-----
A
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-----
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-------
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A
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L
-----
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-----
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I
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A
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A
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A
V
S
I
D
--
G
H
Y
I
D
S
L
N
M
A
I
I
5
PsiBlast_PDB
74.37
30%
-137
- C1 -
4R3K
3
Y209_SULSO
A:
[44-165]
-----------------------------------------------------------------
E
-------------
H
L
K
E
Y
-----
G
--
L
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-----
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A
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-
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FSNIKQ
L
--
P
S
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--
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---------
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M
K
-------
N
D
-------
Y
-----
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----
A
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P
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Y
Y
A
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--
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4
PsiBlast_PDB
74.05
30%
-135
- C1 -
4LX9
3
Y209_SULSO
A:
[44-165]
-----------------------------------------------------------------
E
-------------
H
L
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--
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FSNIKQ
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53
HHSearch
72.28
20%
-115
- C1 -
1S3Z
4
AAC6_SALEN
A:
[23-161]
-----------
I
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----
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----
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A
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-----
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--
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-----
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M
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-
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--
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DYVNGCDSS
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-----
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G-
C
-----
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E
-
M
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V
I
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Y
R
K
R
C
--------------
48
HHSearch
71.81
19%
-126
- C1 -
2AE6
1
?
A:
[9-161]
----------
T
I
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--------------------------------
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----
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-----
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--
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--
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SLAAH----
Q
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-----
S
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I
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-----
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--
G
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C
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Y
Q
Y
A
Y
F
8
PsiBlast_PDB
71.47
30%
-155
- C1 -
4PV6
1
?
C:
[43-143]
-------------------------------------------------------------------------------
D
L
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--
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R--------
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-----
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-------
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-------
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----
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S
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L
P
N
Y
Y
S
D
S
--
S
--
N
A
Y
T
M
W
R
I
V
24
PsiBlast_CBE
71.33
35%
-151
- C1 -
2CNS
2
?
C:
[48-142]
----------------------------------------------------------------------------------------------------------
D
D
R
M
A
A
F
A
I
------------
T
--
Q
V
V
--
L
---------
D
E
A
T
L
F
N
I
A
V
D
P
D
F
Q
R
R
G
L
G
R
M
L
L
E----
H
L
I
-------
D
E
-------
L
-----
E
TRGV
V
T
-
L
W
L
E
V
R
A
S
N
A
A
A
I
A
L
Y
E
S
L
G
F
N
E
A
T
I
R
R
N
Y
Y
P
T
A
QG
H
--
E
D
A
I
I
M
A
L
P
22
PsiBlast_CBE
71.18
35%
-151
- C1 -
2CNT
2
?
C:
[48-142]
----------------------------------------------------------------------------------------------------------
D
D
R
M
A
A
F
A
I
------------
T
--
Q
V
V
--
L
---------
D
E
A
T
L
F
N
I
A
V
D
P
D
F
Q
R
R
G
L
G
R
M
L
L
E----
H
L
I
-------
D
E
-------
L
-----
E
TRGV
V
T
-
L
W
L
E
V
R
A
S
N
A
A
A
I
A
L
Y
E
S
L
G
F
N
E
A
T
I
R
R
N
Y
Y
P
T
A
QG
H
--
E
D
A
I
I
M
A
L
P
23
PsiBlast_CBE
70.74
35%
-154
- C1 -
2CNT
3
?
B:
[48-142]
----------------------------------------------------------------------------------------------------------
D
D
R
M
A
A
F
A
I
------------
T
--
Q
V
V
--
L
---------
D
E
A
T
L
F
N
I
A
V
D
P
D
F
Q
R
R
G
L
G
R
M
L
L
E----
H
L
I
-------
D
E
-------
L
-----
E
TRGV
V
T
-
L
W
L
E
V
R
A
S
N
A
A
A
I
A
L
Y
E
S
L
G
F
N
E
A
T
I
R
R
N
Y
Y
P
T
A
QG
H
--
E
D
A
I
I
M
A
L
P
3
PsiBlast_PDB
70.58
35%
-150
- C1 -
2CNT
2
?
A:
[48-142]
----------------------------------------------------------------------------------------------------------
D
D
R
M
A
A
F
A
I
------------
T
--
Q
V
V
--
L
---------
D
E
A
T
L
F
N
I
A
V
D
P
D
F
Q
R
R
G
L
G
R
M
L
L
E
----
H
L
I
-------
D
E
-------
L
-----
E
T
R
GV
V
T
-
L
W
L
E
V
R
A
S
N
A
A
A
I
A
L
Y
E
S
L
G
F
N
E
A
T
I
R
R
N
Y
Y
P
T
A
Q
G
H
--
E
D
A
I
I
M
A
L
P
2
PsiBlast_PDB
70.26
35%
-151
- C1 -
2CNS
2
?
A:
[48-142]
----------------------------------------------------------------------------------------------------------
D
D
R
M
A
A
F
A
I
------------
T
--
Q
V
V
--
L
---------
D
E
A
T
L
F
N
I
A
V
D
P
D
F
Q
R
R
G
L
G
R
M
L
L
E
----
H
L
I
-------
D
E
-------
L
-----
E
T
R
GV
V
T
-
L
W
L
E
V
R
A
S
N
A
A
A
I
A
L
Y
E
S
L
G
F
N
E
A
T
I
R
R
N
Y
Y
P
T
A
Q
G
H
--
E
D
A
I
I
M
A
L
P
26
PsiBlast_CBE
70.18
35%
-150
- C1 -
2CNM
2
?
C:
[48-142]
----------------------------------------------------------------------------------------------------------
D
D
R
M
A
A
F
A
I
------------
T
--
Q
V
V
--
L
---------
D
E
A
T
L
F
N
I
A
V
D
P
D
F
Q
R
R
G
L
G
R
M
L
L
E----
H
L
I
-------
D
E
-------
L
-----
E
TRGV
V
T
-
L
W
L
E
V
R
A
S
N
A
A
A
I
A
L
Y
E
S
L
G
F
N
E
A
T
I
R
R
N
Y
Y
P
T
A
QG
H
--
E
D
A
I
I
M
A
L
P