@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : gbs1826: (2015-12-11 )
MSLMWDVLTGKESVRTLKKQLDKELIHSVYAPRKRSKFHDIITSHHKEIDEVAINTKTAIHKVANQLDEAIKGEFRSKVEESIESNQQKYNHL
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10........20.--.......30.....------...-----40........----50....------------.-------...60....--....70........80......-..90..------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
L
M
W
D
VLT-G
K
E
S
V
R
T
L
K
K
Q
L
D
--
K
E
L
I
H
S
V
YAPRK
R
S
------
K
F
H
-----
D
I
I
T
S
H
H
K
E
I
----
D
E
V
AIN------------
T
-------
K
T
A
I
H
K
V
A
N
--
Q
L
D
E
A
I
K
G
E
F
R
S
K
V
E
E
S
I
E
S
N
Q
-
Q
K
YNHL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
77.01
25%
-28
- C3 -
4R5G
-
DNAK_ECOLI
A:
[157-216]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
EEAG
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
70.04
25%
-29
- C3 -
1DKZ
-
A:
[146-205]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
69.84
25%
-22
- C3 -
4JNE
-
DNAK_ECOLI
A:
[530-589]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
69.21
25%
-23
- C3 -
1DKX
-
A:
[146-205]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
68.47
25%
-21
- C3 -
4JN4
-
DNAK_ECOLI
A:
[530-589]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
67.94
25%
-20
- C3 -
1DKY
1
DNAK_ECOLI
A:
[146-205]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
AG
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
67.40
28%
0
- C3 -
2HI0
7
?
A:
[152-240]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
F
A
L
-
G
E
K
S
G
I
R
R
K
P
A
P
D
M
T
S
E
C
V
K
V
L
G
V
P
R
D
K
C
------
V
Y
I
G
DS
E
I
D
I
Q
T
A
R
N
S
E
M
----
D
E
I
A
V
N
WGFRS
V
P
F
L
Q
K
H
G
-------
A
T
V
I
V
D
T
A
E
--
K
L
E
E
A
I
L
G
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
67.24
25%
-23
- C3 -
4B9Q
-
DNAK_ECOLI
A:
[534-593]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
67.14
25%
-25
- C3 -
4R5L
1
DNAK_ECOLI
A:
[157-216]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
AG
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
66.77
25%
-30
- C3 -
4JNF
-
A:
[143-202]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
66.43
25%
-24
- C3 -
3QNJ
1
DNAK_ECOLI
A:
[146-205]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
------
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
PsiBlast_PDB
66.34
25%
-18
- C3 -
3DPP
1
DNAK_ECOLI
A:
[146-205]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
EAG
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
65.94
25%
-24
- C3 -
2KHO
-
DNAK_ECOLI
A:
[534-593]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
65.88
25%
-20
- C3 -
4R5I
3
A:
[157-216]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
65.16
25%
-16
- C3 -
3DPO
2
DNAK_ECOLI
A:
[146-205]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
E
E
A
G
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
PsiBlast_PDB
63.04
25%
-10
- C3 -
3DPQ
1
DNAK_ECOLI
A:
[146-205]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
T
R
N
------
Q
G
D
-----
H
L
L
H
S
T
R
K
Q
V
EEAG
D
K
L
P
A
D
------------
D
-------
K
T
A
I
E
S
A
L
T
--
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
K
M
Q
E
L
A
-
Q
V
S
Q
K
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
61.50
16%
-29
- C3 -
4UVJ
-
SCC3_YEAST
A:
[2-387]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DSVKEI
V
L
P
L
F
Y
D
L
L
N
A
A
SIL
C
P
L
L
E
S
F
I
T
F
S
E
T
E
L
K
K
I
T
D
K
T
I
--
K
A
F
M
D
S
T
I
G
N
S
K
V
D
------
M
K
Y
-----
D
I
F
A
K
F
I
H
H
I
----
H
H
F
--
E
------------
K
-------
K
E
L
Q
E
K
F
L
N
--
Q
I
-
A
T
L
K
I
H
L
K
K
F
L
Q
E
K
M
D
P
N
N
-
S
R
D
D
Y
K
D
L
T
C
S
L
Y
E
L
Y
I
N
K
L
T
I
L
G
R
D
Y
P
I
E
V
D
E
E
L
L
Q
L
F
L
N
N
FVSRIPIMFQDFD
D
S
T
A
Q
E
INF
K
M
L
V
L
L
A
T
W
N
L
E
K
W
R
E
I
I
E
K
V
RDLRSVW
K
P
I
A
A
I
I
G
R
L
N
T
L
V
I
S
L
A
A
T
N
E
T
FEN
I
N
S
L
F
Y
L
K
W
S
A
C
T
S
L
M
D
I
I
V
A
I
K
I
F
E
L
K
LPADA
T
T
W
R
Y
S
M
S
E
Q
F
PFYLH
D
N
A
S
K
V
L
L
K
I
F
L
Y
L
E
S
L
F
A
K
Q
V
D
V
Q
L
E
R
V
ADEDANLNDLPETGFFEN
I
E
T
E
F
L
L
F
T
V
K
L
K
G
L
M
K
L
NILD
E
R
F
A
S
R
V
A
L
NKEKLG
P
L
F
K
K
I
V
32
Fugue
60.97
21%
-2
- C3 -
1XOU
-
?
B:
[2-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
V
S
Q
T
R
N
K
E
L
L
D
--
K
K
I
R
S
E
I
E
A
I
K
K
I
I
------
A
E
F
-----
D
V
V
K
E
S
V
N
E
L
----
S
E
K
A
K
T
------------
D
-------
P
Q
A
A
E
K
L
N
K
--
L
I
E
G
Y
T
Y
G
E
E
R
K
L
Y
D
S
A
L
S
K
I
E
-
K
L
I
E
T
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
59.42
16%
-22
- C3 -
4RIC
5
FAN1_HUMAN
A:
[1-631]
TGHP
Y
Y
L
R
S
F
L
V
V
L
K
T
V
L
E
N
E
D
D
M
L
L
F
D
E
Q
E
K
G
I
V
T
K
F
Y
Q
LS
A
T
G
Q
K
L
Y
V
R
L
F
Q
R
KL
S
W
I
K
MTKLEYEEIALDL
T
P
V
I
E
E
L
T
N
A
GFLQTESELQE
L
S
E
V
L
E
L
LS
A
P
E
L
K
S
L
A
K
T
F
HLVNPNGQ
K
Q
Q
L
V
D
A
F
L
K
L
A
K
Q
R
S
V
I
G
A
V
I
L
K
R
A
K
A
L
A
G
Q
S
V
R
I
C
K
G
P
R
A
V
F
S
R
I
L
L
L
F
S
LTDSMEDEDAACGGQGQLS
T
V
L
L
V
NLGR
M
E
F
P
S
Y
T
I
N
R
K
T
HIFQD
R
D
D
L
I
R
Y
A
A
A
T
H
M
L
S
D
I
S
S
A
M
A
N
GN
W
E
E
A
K
E
L
A
Q
C
A
K
R
D
W
N
R
L
KNH
P
S
L
R
C
H
E
D
LP
L
F
L
R
C
F
T
V
G
W
I
Y
T
R
I
L
S
R
F
V
E
I
L
Q
-
R
L
H
M
Y
E
E
A
V
R
E
L
E
--
S
L
L
S
Q
R
I
Y
C
P
D
S
R
G
------
R
W
W
-----
D
R
L
A
L
N
L
H
Q
H
----
L
K
R
L
E
P
------------
T
-------
I
K
C
I
T
E
G
L
A
DP
E
V
R
T
G
H
R
L
S
L
Y
Q
R
A
V
R
L
R
E
S
P
S
C
K
K
F
K
H
L
FQQLPEM
A
V
Q
D
V
K
H
V
T
I
T
G
R
L
CK
S
V
F
V
MVLCS
V
E
E
L
A
L
A
H
Y
R
R
S
GFDQGIHGE
G
S
T
F
S
T
L
Y
G
L
L
L
W
DIIFMDGIPDVFRNACQAFPLDLCTDS
F
F
T
S
R
R
P
A
L
E
A
R
L
Q
L
I
H
D
AP
E
E
S
L
R
A
W
V
A
A
T
W
H
E
Q
EGRVASLVSWDRFTS
L
Q
Q
A
Q
D
L
V
S
C
L
G
G
P
V
L
S
G
V
C
R
H
L
A
A
DFRHCRGGLPD
L
V
V
W
N
SQSR
H
F
K
L
V
E
V
K
G
PNDRLS
H
K
Q
M
I
W
L
A
E
L
Q
K
L
G
A
E
V
E
V
C
H
V
V
A
V------------------------
37
Fugue
51.08
12%
-25
- C4 -
1QAX
-
MVAA_PSEMV
A:
[111-220]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
M
H
A
Q
V
Q
I
V
G
I
Q
D
P
L
N
-
A
R
L
S
L
L
R
R
K
D
E
I
I
--
E
L
A
N
R
K
D
Q
L
L
N
S
L
G
GGCR
D
I
E
V
H
-----
T
F
A
D
T
P
R
G
P
M
----
L
V
A
H
L
I
------------
V
DVRDAMG
A
N
T
V
N
T
M
A
E
--
A
V
A
P
L
M
E
A
I
T
G
G
Q
V
R
L
R
I
L
S
N
----
L
A
D
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------