@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu33120: (2016-07-25 )
MVLKRIRDMFVASVHEGLDKMENPKVMLNQYVRDMESDIAKAKQTIVKQHTIAYQFKKKYEEAAEVAGKRKNQAQLAFDAGEEELAKKALTEMKYLEGKAAEHKASYEQANSQLADLKEQLAALETKLQDVKDKKQALIARANAAKAKEHMNTTFDKIDSESAYREFLRIENRIEEMEIRANYSKSAEAGTELTRKEFADDVEAEIEKMRTLSLQKSDQTKAANE
Atome Classification :
(20 SA)
-------.........10.--.......20-..---......30.....---...40........50--.........60.......-----------.70..-..------------....80------.-----.--.......90--------..---..-..---------------.--.100.....-------------..110....--...120..-----------.....130--------.........140----------.........150......--------.160.-...-...170----...-...-.180......-.--190.....---..200-------......--.210.......220...----------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------
M
V
L
K
R
I
R
D
M
F
V
A
--
S
V
H
E
G
L
D
KM-EN---
P
K
V
M
L
N
Q
Y
V
R
D
M
E
---
S
D
I
A
K
A
K
Q
T
I
V
K
Q
H
---
T
I
A
Y
Q
F
K
K
K
Y
E
E
A
A
E
V
AG-----------KRKN
Q
-
A
Q
------------
L
A
FDA-------
G
-----
E
--
E
E
L
A
K
K
A
L
T
--------
E
M
---
K
Y
-LE---------------G--KA
A
E
HK
A
S
Y
-------------
E
Q
AN
S
Q
L
A
D
--
L
K
E
Q
L
A
A
L
-----------
E
T
K
L
Q
D
----------
V
K
D
K
K
Q
A
L
I
A------------RA
N
A
A
K
A
K
E
H
M
N
T
T
F
DKI--------D
S
E
S
A
-
Y
R
E
-
F
L
R
I
E
N
----
R
I
E
-
E
M
E
-
I
RANYSKSAE-A--GT
E
L
T
R
K
E
---
F
A
D
D
V
-------
E
A
E
I
E
K
--
M
R
T
LSLQKSDQTKAANE----------------------------------
21
HHSearch
67.71
24%
-39
- C3 -
4WHE
1
PSPA_ECOLI
A:
[3-142]
--------
I
F
S
R
F
A
D
I
V
N
A
--
N
I
N
A
L
L
E
----
D
---
P
Q
K
L
V
R
L
M
I
Q
E
M
E
---
D
T
L
V
E
V
R
S
T
S
A
R
A
L
---
A
E
K
K
Q
L
T
R
R
I
E
Q
A
S
A
R
E
V
-----------
E
W
Q
E
K
-
A
E
------------
L
A
L
L
K
-------
E
-----
R
--
E
D
L
A
R
A
A
L
I
--------
E
K
---
Q
K
-
L
T
---------------
D
--
L
I
K
S
L
E
H
E
V
-------------
T
L
V
D
D
T
L
A
R
--
M
K
K
E
I
G
E
L
-----------
E
N
K
L
S
E
----------
T
R
A
R
Q
Q
A
L
M
L
------------
R
-----------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.86
26%
37
- C3 -
4WHE
1
PSPA_ECOLI
A:
[3-142]
--------
I
F
S
R
F
A
D
I
V
N
A
--
N
I
N
A
L
L
E
----
D
---
P
Q
K
L
V
R
L
M
I
Q
E
M
E
---
D
T
L
V
E
V
R
S
T
S
A
R
A
L
---
A
E
K
K
Q
L
T
R
R
I
E
Q
A
S
A
R
E
V
-----------
E
W
Q
E
K
-
A
E
------------
L
A
L
L
K
-------
E
-----
R
--
E
D
L
A
R
A
A
L
I
--------
E
K
---
Q
K
-
L
T
---------------
D
L
I
K
S
L
E
H
E
V
T
L
---------------
V
D
D
T
L
A
R
--
M
K
K
E
I
G
E
L
-----------
E
N
K
L
S
E
----------
T
R
A
R
Q
Q
A
L
M
L
------------
R
-----------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
61.04
23%
79
- C3 -
4WHE
1
PSPA_ECOLI
A:
[3-142]
------------
I
F
S
R
F
A
D
--
I
V
N
A
N
I
N
A
L
L
E
D
---
P
Q
K
L
V
R
L
M
I
Q
E
M
E
---
D
T
L
V
E
V
R
S
T
S
A
R
A
L
---
A
E
K
K
Q
L
T
R
R
I
E
Q
A
S
A
R
E
V
-----------
E
W
Q
E
K
-
A
E
------------
L
A
L
L
K
-------
E
-----
R
--
E
D
L
A
R
A
A
L
I
--------
E
K
---
Q
K
-
L
T
---------------
D
--
L
I
K
S
L
E
H
E
V
-------------
T
L
V
D
D
T
L
A
R
--
M
K
K
E
I
G
E
L
-----------
E
N
K
L
S
E
----------
T
R
A
R
Q
Q
A
L
M
L
------------
R
-----------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
56.05
16%
60
- C2 -
4P5W
1
CMC2_HUMAN
A:
[31-394]
----TKR
A
D
P
A
E
L
R
T
I
F
L
K
Y
A
S
I
E
K
N
G
E
F
F
-
M
S
---
P
N
D
F
V
T
R
Y
L
N
I
F
S
QPN
P
K
T
V
E
L
L
S
G
V
V
D
Q
T
KDG
L
I
S
F
Q
E
F
V
A
F
E
S
V
L
C
A
P
D
-----------
A
L
F
M
V
-
A
F
------------
Q
L
F
D
K
-------
A
GKGEV
T
--
F
E
D
V
K
Q
V
F
G
--------
Q
T
---
T
I
-
H
Q
H
IPFNWDS
E
F
V
Q
L
H
F
G
--
K
E
R
K
R
H
L
T
Y
-------------
A
E
F
T
Q
F
L
L
E
--
I
Q
L
E
H
A
K
Q
A
F
V
Q
R
DNARTG
R
V
T
A
I
D
----------
F
R
D
I
M
V
T
I
R
P
------------
H
V
L
T
P
F
V
E
E
C
L
V
A
A
A
G
G
T
--------
T
S
H
Q
V
S
F
S
Y
-
F
N
G
F
N
S
----
L
L
N
-
N
M
E
L
I
R
K
I
Y
S
T
L
A
G
-
T
RK
D
V
E
V
T
K
E
E
---
F
V
L
A
A
QKFGQVT
P
M
E
V
D
I
--
L
F
Q
L
A
D
L
Y
E
P
R
G
R
M
T
L
A
D
I
E
R
I
APPNPDHV
G
G
Y
K
L
A
V
A
T
F
A
G
I
E
N
K
FGLYL
22
HHSearch
52.09
21%
-37
- C3 -
5FD9
-
SNF7_YEAST
A:
[20-94]
----------------------------------------------------------
T
K
A
I
V
R
L
R
---
E
H
I
N
L
L
S
K
K
Q
S
H
L
R
T
Q
I
T
-----------
N
Q
E
N
E
-
A
R
------------
I
F
L
T
K
-------
G
-----
N
--
K
V
M
A
K
N
A
L
K
--------
K
K
---
K
T
-
I
E
---------------
Q
--
L
L
S
K
V
E
G
T
M
-------------
E
S
M
E
Q
Q
L
F
S
--
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
HHSearch
51.61
20%
-293
- C3 -
5CJ0
-
MYH7_HUMAN (first)
A:
[1646-1689]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Q
---------------
S
--
L
L
K
D
T
Q
I
Q
L
-------------
D
D
A
V
R
A
N
D
D
--
L
K
E
N
I
A
I
V
-----------
E
R
R
N
N
L
----------
L
Q
A
E
L
E
E
L
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------
51
Fugue
48.23
21%
101
- C1 -
4UY5
2
EGTD_MYCS2
A:
[2-327]
T
L
S
L
A
N
Y
L
A
A
D
S
A
A
E
A
L
R
R
--
D
V
R
A
G
L
T
A
A
-
P
K
S
L
P
P
K
W
F
Y
D
A
V
G
S
D
L
F
---
D
Q
I
T
R
L
P
E
-
Y
Y
P
T
R
---
T
E
A
Q
I
L
R
T
R
S
A
E
I
I
A
A
A
G
AD
T
L
V
E
L
G
SGT
S
E
K
T
R
M
L
L
D
A
M
R
D
A
ELLR
R
F
I
P
F
D
V
-------
D
-----
A
--
G
V
L
R
S
A
G
A
A
I
G
A
E
Y
PGI
E
I
---
D
A
-
V
C
---------------
G
--
D
F
E
E
H
L
G
K
I
PHVGR
R
L
V
V
F
L
GS
T
I
G
N
L
T
P
A
P
--
R
A
E
F
L
S
T
L
-----------
A
D
T
L
Q
P
G
D
S
L
L
L
G
T
D
L
V
K
D
T
G
R
L
V
R
A
Y
D
DAAG
V
T
A
A
F
N
R
N
V
L
A
V
V
N
R
E
L
S
A
D
F
D
L
D
A
F
E
H
V
A
K
W
N
S
D
E
E
-
R
I
E
M
W
L
R
A
R
T
A
Q
H
V
R
V
A
-
A
L
D
-
L
E
V
D
F
A
A
G
E
E
M
L
---
T
E
V
S
C
K
F
---
R
P
E
N
V
-------
V
A
E
L
A
E
A
G
L
R
Q
T
H
W
W
T
D
P
A
G
D
F
G
L
S
L
A
V
R
L
E
H
H
H
H------------------------
50
Fugue
45.84
14%
-43
- C2 -
1I6Z
-
A:
[85-219]
------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
---
P
E
-
F
M
---------------
L
--
I
G
E
K
S
N
P
E
E
-------------
E
V
E
L
K
K
L
K
D
--
L
E
V
S
A
E
K
I
-----------
A
N
H
L
Q
E
----------
L
N
K
E
L
S
G
I
Q
Q
------------
G
F
L
A
K
E
L
Q
A
E
A
L
C
K
L
D
R
---------
K
V
K
A
T
-
I
E
Q
-
F
M
K
I
L
E
----
E
I
D
-
T
M
V
-
L
P
E
Q
F
------
K
--
D
S
R
L
K
R
K
N
---
L
V
K
K
V
-------
Q
V
F
L
A
E
--
C
D
T
V
E
Q
Y
I
C
Q
E
T
E
R
L
Q
S
T
N
L
A
L
A
E---------------------------
52
Fugue
45.69
14%
-43
* C2 *
1I6Z
-
A:
[85-219]
------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
---
P
E
-
F
M
---------------
L
--
I
G
E
K
S
N
P
E
E
-------------
E
V
E
L
K
K
L
K
D
--
L
E
V
S
A
E
K
I
-----------
A
N
H
L
Q
E
----------
L
N
K
E
L
S
G
I
Q
Q
------------
G
F
L
A
K
E
L
Q
A
E
A
L
C
K
L
D
R
---------
K
V
K
A
T
-
I
E
Q
-
F
M
K
I
L
E
----
E
I
D
-
T
M
V
-
L
P
E
Q
F
------
K
--
D
S
R
L
K
R
K
N
---
L
V
K
K
V
-------
Q
V
F
L
A
E
--
C
D
T
V
E
Q
Y
I
C
Q
E
T
E
R
L
Q
S
T
N
L
A
L
A
E---------------------------
49
Fugue
43.17
20%
-40
- C3 -
1G2C
-
FUS_HRSVR
A:
[160-209]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
---------------
G
--
E
V
N
K
I
K
S
A
L
-------------
L
S
T
N
K
A
V
V
S
--
L
S
N
G
V
S
V
L
-----------
T
S
K
V
L
D
----------
L
K
N
Y
I
D
K
Q
L
L
------------
P
I
V
N
K
-------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
42.77
18%
-22
- C3 -
4YTD
4
BICD1_MOUSE
A:
[4-96]
---------------------------
N
K
Y
-
E
N
---
E
K
A
M
V
T
E
T
M
T
K
L
R
---
N
E
L
K
A
L
K
E
D
A
A
T
F
S
---
S
L
R
A
M
F
A
T
R
C
D
E
Y
V
T
Q
L
D
-----------
E
M
Q
R
Q
-
L
A
------------
A
A
E
D
E
-------
K
-----
K
T
L
N
T
L
L
R
M
A
I
Q
--------
Q
K
---
L
A
-
L
T
---------------
Q
--
R
L
E
D
L
E
F
D
H
-------------
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
42.63
8%
13
- C3 -
4UY3
-
EZRA_STAA1
A:
[23-216]
----------------
M
R
S
--
N
K
R
Q
I
I
E
K
A
-
I
E
---
R
K
N
E
I
E
T
--
L
P
F
D
---
Q
N
L
A
Q
L
S
K
-
L
N
L
K
G
---
E
T
K
T
K
Y
D
A
M
K
K
D
N
V
E
S
T
N
-----------
K
Y
L
A
P
-
V
E
------------
E
K
I
H
N
-------
A
-----
E
--
A
L
L
D
K
-------------------------------------
F
--
S
F
N
A
S
Q
S
E
I
-------------
D
D
A
N
E
L
M
D
S
--
Y
E
Q
S
Y
Q
Q
Q
-----------
L
E
D
V
N
E
----------
I
I
A
L
Y
K
D
N
D
E
------------
L
Y
D
K
C
K
V
D
Y
R
E
M
K
R
D
V
L
A
--------
N
R
H
Q
F
-
G
E
A
-
A
S
L
L
E
T
----
E
I
E
K
F
E
P
-
R
L
E
Q
Y
E
V
L
K
A
-
D
--
G
N
Y
V
Q
A
H
N
---
H
I
A
A
L
-------
N
E
Q
M
K
Q
--
L
R
S
Y
M
H
G
--------------------------------------------
6
PsiBlast_PDB
42.51
27%
94
- C3 -
2VCV
3
GSTA3_HUMAN
A:
[29-139]
-------------------------------------------------------------------------
E
F
E
E
K
F
I
G
S
A
E
D
L
G
-----------
K
L
R
N
D
-
G
S
------------
L
M
F
Q
Q
VPMVEID
G
-----
M
--
K
L
V
Q
T
R
A
I
L
--------
N
Y
I
A
S
K
Y
N
L
Y
---------------
G
--
K
D
I
K
E
R
A
L
I
-------------
D
M
Y
T
E
G
M
A
D
--
L
N
E
M
I
L
L
L
-----------
P
L
C
R
P
E
----------
E
K
D
A
K
I
A
L
I
K
------------
E
----
K
T
K
S
R
Y
F
P
A
F
E
K
V
------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
42.49
27%
91
- C3 -
1TDI
2
GSTA3_HUMAN
A:
[29-139]
-------------------------------------------------------------------------
E
F
E
E
K
F
I
G
S
A
E
D
L
G
-----------
K
L
R
N
D
-
G
S
------------
L
M
F
Q
Q
VP
M
V
E
I
D
G
-----
M
--
K
L
V
Q
T
R
A
I
L
--------
N
Y
I
A
S
K
Y
N
L
Y
---------------
G
--
K
D
I
K
E
R
A
L
I
-------------
D
M
Y
T
E
G
M
A
D
--
L
N
E
M
I
L
L
L
-----------
P
L
C
R
P
E
----------
E
K
D
A
K
I
A
L
I
K
------------
E
----
K
T
K
S
R
Y
F
P
A
F
E
K
V
------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
41.98
10%
-276
- C3 -
4LIN
2
NEEDL_BPP22
A:
[77-117]
----------------------------------------
Q
D
V
E
L
A
D
H
E
---
A
R
I
K
Q
L
R
I
D
V
D
D
H
E
---
S
R
I
T
A
N
T
K
A
I
T
A
L
N
V
R
V
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
41.09
22%
-
- C3 -
3HE5
-
?
B:
[4-44]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
A
Y
-
L
R
---------------
K
--
K
I
A
R
L
K
K
D
N
-------------
L
Q
L
E
R
D
E
Q
N
--
L
E
K
I
I
A
N
L
-----------
R
D
E
I
A
R
----------
L
E
N
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
39.34
25%
124
- C3 -
5F97
3
?
A:
[214-337]
---------------------------------------------------------------------------------------------------------------------------------------------------
T
--------
T
T
---
Q
T
-
I
D
---------------
G
--
K
T
V
S
T
T
I
S
S
-------------
K
V
V
D
S
T
A
A
D
NT
Y
K
Q
S
Y
T
E
I
-----------
T
N
A
L
K
D
----------
V
P
D
S
A
Q
A
L
L
A
------------
Q
A
---------
S
T
L
I
N
T
I
--------
N
T
A
C
P
-
Y
----
F
S
V
T
N
------------------
K
S
G
G
-
P
--
Q
M
E
P
T
R
G
K
LCG
F
T
E
E
I
-------
S
A
-
I
Q
K
--
M
I
T
D
A
Q
E
L
V
N
Q
T
S
V
I
N
E
----------------------------------
20
PsiBlast_PDB
37.67
53%
-104
- C3 -
4D3O
2
NOSO_BACSU
A:
[298-322]
------------------------------------------------------------
S
I
V
D
H
H
---
T
A
A
S
Q
F
-
K
R
F
E
E
Q
A
E
E
A
G
-----------
R
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
HHSearch
37.60
6%
-136
- C3 -
3NA7
1
?
A:
[32-78]
------------------------------------------
K
D
L
D
K
A
L
---
N
D
K
E
A
K
N
K
A
I
L
N
L
E
---
E
E
K
L
A
L
K
L
Q
V
S
K
N
E
Q
T
L
Q
-----------
D
T
N
A
K
-
I
A
------------
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
36.92
53%
-109
- C3 -
4D3V
2
NOSO_BACSU
A:
[301-325]
------------------------------------------------------------
S
I
V
D
H
H
---
T
A
A
S
Q
F
-
K
R
F
E
E
Q
A
E
E
A
G
-----------
R
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------