@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu36330: (2016-07-31 )
MKTFKLVDLNVERVDKEEQSIEQFPLIDGLIINKEDGENHWLIEALVQKEHLSFFEQLQNSQSEAKVFVTITKKSNRPAQLTAAVKNIVKLEESIQVLLYGQMVTRKQQGTETILESLVKEGYTGTKLIEAFKQKL
Atome Classification :
(20 SA)
-----------........--.10........20...-.....30......-------...40......---------------..50........----60........70........80....----------....90........100.......110.....---..120......-..130....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------MK
T
F
K
L
V
D
--
L
N
V
E
RVD
K
E
E
Q
S
I
E
QF-PLI
D
G
L
-
I
I
NKED-------GE
N
H
W
L
I
E
A
L
V
---------------
Q
K
E
H
L
S
F
F
E
Q
L
Q----NSQSE
A
K
V
F
V
T
I
TKKSNR
P
A
Q
L
T
A
A
V
----------
K
N
I
V
K
L
E
E
S
I
Q
V
L
L
Y
G
Q
M
V
T
R
KQQ
G
T
E
T
I
L
E
S
---
L
V
KE-GYT
G
T
K
-
L
I
E
A
F
K
QKL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
76.61
31%
-153
* C5 *
4QXZ
-
?
A:
[1-133]
-----------
M
K
T
F
K
A
V
R
--
F
---
Q
I
V
N
E
H
G
R
I
I
E
Y
-
E
L
E
D
G
V
-
I
I
N
K
E
E
-------
S
G
T
G
W
L
L
E
I
V
I
---------------
S
N
E
H
Y
E
T
F
K
E
Y
Q
----
D
N
E
Q
L
L
D
I
R
V
V
I
T
R
P
A
N
D
P
A
L
F
E
S
T
V
----------
K
S
I
K
N
F
K
T
T
M
S
I
V
F
E
C
H
I
Y
T
L
R
Q
Q
Y
A
E
S
L
L
E
Q
---
L
I
D
D
-
G
L
S
G
E
E
-
L
K
K
S
F
N
R
M
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
75.66
32%
-152
- C5 -
4QXZ
-
?
A:
[1-133]
-----------
M
K
T
F
K
A
V
R
--
F
Q
I
V
N
E
H
G
---
R
I
I
E
Y
-
E
L
E
D
G
V
-
I
I
N
K
E
E
-------
S
G
T
G
W
L
L
E
I
V
I
---------------
S
N
E
H
Y
E
T
F
K
E
Y
Q
----
D
N
E
Q
L
L
D
I
R
V
V
I
T
R
P
A
N
D
P
A
L
F
E
S
T
V
----------
K
S
I
K
N
F
K
T
T
M
S
I
V
F
E
C
H
I
Y
T
L
R
Q
Q
Y
A
E
S
L
L
E
Q
---
L
I
D
D
-
G
L
S
G
E
E
-
L
K
K
S
F
N
R
M
M
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
61.55
32%
-15
- C5 -
4QXZ
-
?
A:
[-1-144]
----------H
M
K
T
F
K
A
V
R
--
F
Q
I
V
---
N
E
H
G
R
I
I
E
Y
-
E
L
E
D
G
V
-
I
I
N
K
E
E
-------
S
G
T
G
W
L
L
E
I
V
I
---------------
S
N
E
H
Y
E
T
F
K
E
Y
Q
----
D
N
E
Q
L
L
D
I
R
V
V
I
T
R
P
A
N
D
P
A
L
F
E
S
T
V
----------
K
S
I
K
N
F
K
T
T
M
S
I
V
F
E
C
H
I
Y
T
L
R
Q
Q
Y
A
E
S
L
L
E
Q
---
L
I
D
D
-
G
L
S
G
E
E
-
L
K
K
S
F
N
R
M
M
Q
S
KPKLKDEKL----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
48.59
26%
-12
- C7 -
4ZE8
1
?
A:
[253-339]
-------------------------------------------------------------------
L
I
---------------
E
N
F
H
M
F
T
F
N
M
N
Q
----
E
V
F
K
D
K
K
L
R
R
A
L
A
L
A
V
N
R
P
I
M
V
E
A
L
W
----------
K
K
Q
A
S
I
P
A
G
F
N
F
P
N
Y
G
E
T
F
D
P
K
R
K
A
M
E
Y
N
V
E
E
A
K
R
L
V
K
E
S
G
Y
D
G
T
P
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
48.39
26%
1
- C7 -
4ZEK
2
?
A:
[253-339]
-------------------------------------------------------------------
L
I
---------------
E
N
F
H
M
F
T
F
N
M
N
Q
----
E
V
F
K
D
K
K
L
R
R
A
L
A
L
A
V
N
R
P
I
M
V
E
A
L
W
----------
K
K
Q
A
S
I
P
A
G
F
N
F
P
N
Y
G
E
T
F
D
P
K
R
K
A
M
E
Y
N
V
E
E
A
K
R
L
V
K
E
S
G
Y
D
G
T
P
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
47.96
26%
-0
- C7 -
4ZED
2
?
A:
[253-339]
-------------------------------------------------------------------
L
I
---------------
E
N
F
H
M
F
T
F
N
M
N
Q
----
E
V
F
K
D
K
K
L
R
R
A
L
A
L
A
V
N
R
P
I
M
V
E
A
L
W
----------
K
K
Q
A
S
I
P
A
G
F
N
F
P
N
Y
G
E
T
F
D
P
K
R
K
A
M
E
Y
N
V
E
E
A
K
R
L
V
K
E
S
G
Y
D
G
T
P
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
47.81
26%
5
- C7 -
4RA1
1
?
A:
[253-339]
-------------------------------------------------------------------
L
I
---------------
E
N
F
H
M
F
T
F
N
M
N
Q
----
E
V
F
K
D
K
K
L
R
R
A
L
A
L
A
V
N
R
P
I
M
V
E
A
L
W
----------
K
K
Q
A
S
I
P
A
G
F
N
F
P
N
Y
G
E
T
F
D
P
K
R
K
A
M
E
Y
N
V
E
E
A
K
R
L
V
K
E
S
G
Y
D
G
T
P
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
47.79
26%
-5
- C7 -
4ZEB
1
?
A:
[253-339]
-------------------------------------------------------------------
L
I
---------------
E
N
F
H
M
F
T
F
N
M
N
Q
----
E
V
F
K
D
K
K
L
R
R
A
L
A
L
A
V
N
R
P
I
M
V
E
A
L
W
----------
K
K
Q
A
S
I
P
A
G
F
N
F
P
N
Y
G
E
T
F
D
P
K
R
K
A
M
E
Y
N
V
E
E
A
K
R
L
V
K
E
S
G
Y
D
G
T
P
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
47.31
26%
6
- C7 -
4ZEI
2
?
A:
[253-339]
-------------------------------------------------------------------
L
I
---------------
E
N
F
H
M
F
T
F
N
M
N
Q
----
E
V
F
K
D
K
K
L
R
R
A
L
A
L
A
V
N
R
P
I
M
V
E
A
L
W
----------
K
K
Q
A
S
I
P
A
G
F
N
F
P
N
Y
G
E
T
F
D
P
K
R
K
A
M
E
Y
N
V
E
E
A
K
R
L
V
K
E
S
G
Y
D
G
T
P
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
47.27
20%
40
- C4 -
4L9P
11
?
B:
[68-519]
---VHPGIP
A
L
F
R
E
P
P
L
I
H
DL
L
S
T
E
T
T
E
L
Q
S
E
T
V
N
K
C
L
P
L
L
K
G
I
-
H
N
S
Q
K
G
-------
P
F
N
K
Y
G
I
P
A
L
Q
---------------
R
K
D
H
L
E
Y
L
Y
D
S
L
----
E
D
Y
P
A
S
F
V
----
A
L
D
A
S
R
P
W
M
V
Y
W
A
L
----------
A
G
L
C
L
L
G
E
D
V
----------------------------------
T
R
-
F
R
E
R
V
I
S
T
F
T
A
A
QNST
G
G
I
G
GGHGQMSH
V
A
S
S
Y
A
A
V
L
S
I
A
M
V
GG
E
E
A
F
K
L
ID
R
K
A
M
W
K
W
L
G
K
L
KQPDGGFTVCEG
G
E
E
D
V
R
G
A
Y
C
A
M
V
V
H
A
L
L
DLPLALPPEA
E
A
R
Q
N
GLETFTDG
L
P
E
Y
L
S
R
C
QTYEGGISGSPGSEAH
G
A
Y
A
F
C
A
L
A
C
L
C
L
L
GRPEV
V
V
P
R
Y
M
N
I
A
T
L
L
P
W
L
S
A
RQYAPEGGFSGRTN
K
L
V
D
GCYSH
W
V
G
N
C
W
P
L
V
Q
A
A
L
D
GTQPLAG
P
K
R
S
S
VGNLYS
R
E
G
L
T
R
Y
I
L
SCCQCKL
G
G
L
R
DKPG
K
H
P
D
S
Y
H
T
C
Y
A
L
T
G
L
S
T
V
Q
Y
Y
H
Y
C
T
DSSVSSKDDF
S
S
A
F
S
W
K
H
D
P
NFASDGQGSDIGVFTENDRLVPFHPIFVIP
H
K
S
A
E
D
I
R
V
W
F
E
N
QSFDL
7
PsiBlast_PDB
47.20
26%
-6
- C7 -
4ZEC
2
?
A:
[253-339]
-------------------------------------------------------------------
L
I
---------------
E
N
F
H
M
F
T
F
N
M
N
Q
----
E
V
F
K
D
K
K
L
R
R
A
L
A
L
A
V
N
R
P
I
M
V
E
A
L
W
----------
K
K
Q
A
S
I
P
A
G
F
N
F
P
N
Y
G
E
T
F
D
P
K
R
K
A
M
E
Y
N
V
E
E
A
K
R
L
V
K
E
S
G
Y
D
G
T
P
-
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
40.93
34%
-46
- C7 -
3QYF
1
?
A:
[80-134]
----------------------------------------------------------------------------------------
F
S
T
F
E
K
L
K
----
H
N
K
S
E
I
Y
V
F
L
Y
S
T
N
T
S
N
--
S
Q
L
A
G
E
V
----------
I
R
D
Y
L
I
E
E
G
I
R
----
S
E
L
V
T
V
K
T
I
S
S
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
36.25
33%
-489
- C2 -
4LO6
-
?
A:
[23-41]
-----------------------------------
T
I
-
D
L
A
D
G
N
Y
V
V
R
R
G
D
-------
G
---
W
I
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
36.19
15%
22
- C5 -
1VZ0
2
SP0J_THET2
A:
[23-208]
VVRLPLASIRP
N
P
R
Q
P
R
K
R
--
F
A
E
E
S
L
K
E
L
A
D
S
I
R
E
K
-
G
L
L
Q
P
L
-
L
V
R
P
Q
G
D
G
Y
E
L
VA
G
E
R
R
Y
R
A
A
L
M
A
GLQ
E
V
P
A
V
V
K
DLT
D
R
E
A
L
E
L
A
L
V
E
N
L
Q
REDL
S
P
V
E
E
A
R
G
Y
Q
A
L
L
E
M
G
L
T
Q
E
E
V
A
R
R
V
GKA
R
S
T
V
A
N
A
L
R
L
L
Q
L
P
P
E
A
L
E
A
L
E
R
G
E
I
T
--
A
G
H
A
R
A
L
L
M
L
---
E
P
E
D
-
R
L
W
G
L
K
-
E
I
L
E
K
G
L
S
V
RQAEA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
34.52
5%
-115
- C7 -
2HL7
2
CCMH_PSEAE
A:
[51-72]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
I
Y
G
---
Q
L
Q
Q
-
G
K
S
D
G
E
-
I
V
D
Y
M
V
A
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
33.09
23%
-234
- C7 -
3FPN
-
?
A:
[146-176]
-------------------------------------------------------------------------------------------------------------------------------------------------
T
K
M
Q
I
L
A
P
I
V
S
G
K
K
G
T
H
A
K
T
L
E
D
---
I
R
K
Q
-
G
Y
V
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
32.45
31%
-198
* C7 *
1G2Y
-
HNF1A_MOUSE
D:
[1-30]
---------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
S
K
L
S
Q
L
Q
T
E
M
L
A
A
---
L
L
E
S
-
G
L
S
K
E
A
-
L
I
Q
A
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
32.10
32%
-23
- C7 -
1JL2
-
RNH_ECOLI (first)
A:
[40-91]
----------------------------------------------------------------------------------------------------------------
T
R
T
T
N
N
R
M
E
L
K
A
A
I
----------
E
G
L
K
A
L
K
E
P
A
E
V
D
L
Y
T
D
S
H
Y
L
K
K
A
F
T
E
G
W
L
E
G
---
W
R
K
R
-
G
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
31.72
13%
-77
* C6 *
1CY5
6
APAF_HUMAN
A:
[1-92]
-----------
M
D
-----
A
--
K
A
R
N
C
L
L
Q
H
R
E
A
L
E
K
D
-
I
--------------------
K
T
S
Y
I
M
D
H
M
I
---------------
S
D
G
F
L
T
I
S
E
E
E
K
----
V
R
N
-----------
E
P
T
Q
Q
Q
R
A
A
M
L
I
----------
K
M
I
L
K
---------------
K
D
N
D
S
Y
V
S
F
Y
N
A
---
L
L
H
E
-
G
Y
--
K
D
-
L
A
A
L
L
H
D
G
I
P--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
31.05
18%
-107
- C6 -
1PU1
-
Y677_METTH
A:
[1-91]
-----------
M
S
L
R
K
L
-------
T
E
G
D
L
D
E
I
S
S
F
L
H
-
N
T
I
S
D
F
-
I
L
K
R
V
S
-------
A
K
E
-------
I
---------------
V
D
I
D
I
T
V
L
V
E
Y
T
----
D
E
---------------------------------------
L
K
V
D
I
S
A
E
L
Y
L
D
E
L
S
D
A
D
P
G
---
I
V
D
E
---
A
V
D
A
-
A
Y
R
S
L
E
S
F
L
D
G
F
R
E
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