@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Rv1693: (2016-05-04 )
MTIDPDQIRAEIDALLASLPDPADAENGPSLAELEGIARRLSEAHEVLLAALESAEKG
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10...---.....20....-...------.30..-..----....40........50.......-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTI
D
P
D
Q
I
R
A
E
I
D
A
---
L
L
A
SLPDPADA-ENG------P
S
L
A
E
-
L
E
----
G
I
A
R
R
L
S
E
A
H
E
V
L
L
A
A
L
E
SAEKG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
83.24
25%
-93
- C1 -
1X9B
-
?
A:
[1-53]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
N
L
S
D
R
A
K
F
E
S
---
M
I
N
S
P
S
K
S
V
F
V
-
R
N
---------
L
N
E
-
L
E
----
A
L
A
V
R
L
G
K
S
Y
R
I
Q
L
D
Q
A
K
E
K
W
K
V
K------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
80.27
15%
-72
- C1 -
2LQG
-
A:
[907-1044]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------GIDPFT
L
V
Q
R
L
E
H
A
A
K
Q
A
A
A
S
A
T
Q
T
I
A
A
A
Q
H
AASAPKASAGPQP
L
L
V
Q
S
C
K
A
V
A
E
Q
I
P
L
L
V
Q
G
V
R
G
S
Q
A
QPDS
P
S
A
Q
L
A
L
I
A
A
S
Q
S
F
L
Q
P
G
G
K
---
M
V
A
A
A
K
A
S
V
P
T
I
Q
D
Q
------
A
S
A
M
Q
-
L
S
----
Q
C
A
K
N
L
G
T
A
L
A
E
L
R
T
A
A
Q
K
A
Q
E
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
75.02
27%
-96
- C1 -
1PGY
-
A:
[1-47]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
V
D
E
V
K
D
M
E
I
A
---
R
L
M
S
L
---------
G
------
L
S
I
E
E
-
A
T
----
E
F
Y
E
N
D
V
T
-
Y
E
R
Y
L
E
I
L
K
S
K
Q
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
70.08
22%
-88
- C1 -
1DS1
8
CAS1_STRC2
A:
[2-324]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
V
D
C
T
A
Y
G
P
E
L
R
A
---
L
A
A
R
L
P
R
T
P
R
A
-
D
L
Y
------
A
F
L
D
A
-
A
H
----
T
A
A
A
S
L
P
G
A
L
A
T
A
L
D
T
F
N
A
E
G
S
E
DG
H
L
L
L
R
GLPVEADADLPTTPSSTPAPEDRSLL
T
M
E
A
M
L
G
L
V
G
R
R
L
G
L
H
T
G
Y
RELRSGTV
Y
H
D
V
Y
P
S
P
GAHHLSSETSETLLEFHTEMAYHRLQPN
Y
V
M
L
A
C
SRADHERT
A
A
T
L
V
A
S
V
R
K
A
L
P
L
LD
E
R
T
R
A
R
L
LD
R
R
M
P
C
C
V
D
VAFRGGVDDPGAIAQVKPLYGDAD
D
P
F
L
G
Y
D
REL
L
A
P
E
D
P
A
D
K
E
A
V
A
A
L
S
K
A
L
D
E
V
T
E
A
V
Y
L
E
PG
D
L
L
I
V
DNFR
T
T
H
A
R
T
P
F
S
P
RWDGK
D
R
W
L
H
R
V
Y
I
R
T
DRNGQLSGGERAG
D
V
V
A
F
T
P
R
G
3
PsiBlast_PDB
69.15
30%
-72
- C1 -
4C0P
-
TNPO3_HUMAN
A:
[433-498]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
W
E
V
T
E
A
V
L
F
---
I
M
A
A
I
A
K
S
V
D
P
-
E
N
N
------
P
T
L
V
E
V
L
E
----
G
V
V
R
L
P
E
T
V
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
68.44
22%
-55
- C1 -
4K7J
4
?
A:
[26-375]
GLLTDYGNASAS
P
W
M
K
K
L
Q
S
V
A
Q
GSG
E
T
F
R
I
L
Q
I
G
D
S
H
T
A
G
D
F
F
T
D
S
L
R
K
R
L
Q
K
T
WGDGGIGWVYPANVKGQRMAA
V
R
H
N
G
N
W
Q
S
L
T
SRNNTGDFPLGG
I
L
A
H
TGSG
G
S
M
T
L
T
A
SDGIASK
Q
R
V
S
L
FAKPLLAE
Q
T
L
T
V
NG
N
T
V
S
A
NGG
G
W
Q
V
L
D
T
G
A
A
L
P
L
T
I
H
T
E
M
P
W
D
I
G
F
I
N
I
E
N
PAG
G
I
T
V
S
A
MGINGAQLTQWSKWRAD
R
M
N
D
L
A
Q
TGAD
L
V
I
L
S
Y
G
T
N
E
A
F
NNNID
I
A
D
T
E
Q
K
W
L
D
T
V
R
Q
I
R
D
S
L
P
A
A
G
I
L
I
I
G
A
P
E
S
L
K
N
-
T
L
G
VCGTRP
V
R
L
T
E
-
V
Q
----
Q
M
Q
R
R
V
A
R
Q
G
Q
T
M
F
W
S
W
Q
N
A
M
G
G
ICS
M
K
N
W
L
N
Q
GWAAKDGVHFS
A
K
G
Y
R
R
A
A
E
M
L
A
D
S
L
E
E
L
V
R
S
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
68.17
30%
-69
- C1 -
4C0O
-
TNPO3_HUMAN
A:
[433-493]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
W
E
V
T
E
A
V
L
F
---
I
M
A
A
I
A
K
S
V
D
P
-
E
N
N
------
P
T
L
V
E
V
L
E
----
G
V
V
R
L
P
E
T
V
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
63.35
30%
-59
- C1 -
4OL0
-
TNPO3_HUMAN
B:
[431-485]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
W
E
V
T
E
A
V
L
F
---
I
M
A
A
I
A
K
S
V
D
P
-
E
N
N
------
P
T
L
V
E
V
L
E
----
G
V
V
R
L
P
E
T
V
H
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
62.90
22%
-14
- C1 -
1Z4H
-
TORI_ECOLI
A:
[1-66]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MQ
H
E
L
Q
P
D
S
L
V
D
L
K
F
I
M
A
D
T
G
F
---
G
K
T
F
I
Y
D
R
I
K
S
-
G
D
L
------
P
K
A
K
V
-
I
H
----
G
R
A
R
W
L
Y
R
D
H
C
E
F
K
N
K
L
L
S
R
A
N
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
62.28
21%
-35
- C1 -
1AEP
-
APL3_LOCMI
A:
[6-158]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
I
A
E
A
V
Q
Q
L
N
H
T
I
V
N
A
A
H
E
L
HETLGLPT
P
D
E
A
L
N
L
L
T
E
Q
A
N
A
F
K
T
K
I
A
E
---
V
T
T
S
L
K
Q
E
A
E
K
-
H
Q
G
------
S
V
A
E
Q
-
L
N
----
A
F
A
R
N
L
N
N
S
--
I
H
D
A
A
T
S
L
N
L
Q
D
Q
L
N
S
L
Q
S
A
L
T
N
V
G
H
Q
W
Q
D
I
A
T
K
T
Q
A
SAQEAWAPV
Q
S
A
L
Q
E
A
A
E
K
T
K
E
A
A
A
N
L
Q
N
S
I
Q
S
A
V
Q
K-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
57.40
21%
-46
- C1 -
1KHY
-
CLPB_ECOLI
A:
[4-142]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DRLT
N
K
F
Q
L
A
L
A
D
A
Q
S
L
A
L
G
H
DNQFIE
P
L
H
L
M
S
A
L
L
N
QEGG
S
V
S
P
L
L
T
S
A
G
I
N
A
G
Q
L
R
T
D
I
N
Q
---
A
L
N
-
R
L
P
Q
V
---------------------------
Q
P
S
Q
D
L
V
R
V
L
N
L
C
D
K
L
A
Q
K
R
GDNFIS
S
E
L
F
V
L
A
A
L
E
S
RG
T
L
A
D
I
L
K
A
A
GAT
T
A
N
I
T
Q
A
I
E
Q--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_CBE
56.72
35%
-9
- C1 -
4ZQB
2
?
B:
[45-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
E
V
D
I
---
A
I
V
A
N
P
D
P
A
D
L
-
A
E
L
------
P
N
L
V
W
-
I
H
S
LWA
G
V
E
R
L
V
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
55.08
35%
-16
- C1 -
5C5I
-
?
A:
[42-80]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
E
V
D
I
---
A
I
V
A
N
P
D
P
A
D
L
-
A
E
L
------
P
N
L
V
W
-
I
H
S
LWA
G
V
E
R
L
V
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
53.70
35%
-7
- C1 -
4ZQB
3
?
A:
[45-83]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
A
E
V
D
I
---
A
I
V
A
N
P
D
P
A
D
L
-
A
E
L
------
P
N
L
V
W
-
I
H
S
LWA
G
V
E
R
L
V
A
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
46.80
41%
-57
* C1 *
1XWJ
-
B:
[3-26]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
E
-
L
I
----
E
S
A
R
K
V
S
E
K
V
S
H
V
L
A
A
L
Q
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
45.41
31%
-99
- C1 -
1P9I
-
?
A:
[15-30]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
K
Q
L
K
A
K
V
E
E
---
L
L
A
K
V
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
39.52
29%
-84
- C1 -
1ZVZ
-
B:
[3-23]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
----
R
Q
A
R
I
L
A
Q
A
T
S
D
L
V
N
A
I
K
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
33.87
24%
-41
- C1 -
2MNI
-
?
A:
[31-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
---
L
L
N
Q
M
G
K
V
N
D
T
-
P
---------
E
E
E
G
-
M
P
----
L
R
A
W
V
I
K
C
A
H
E
A
L
E
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
30.58
29%
-44
- C1 -
3OL3
3
?
A:
[82-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
------
P
T
A
E
E
-
I
N
----
Q
V
A
A
R
L
A
S
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
28.02
29%
-28
- C1 -
2KVC
-
?
A:
[73-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------
P
S
P
E
D
-
V
E
----
R
V
R
A
R
L
A
A
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------