@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3051: (2016-02-13 )
MTFNRVVCGKLSWFIQAGGSMPSLIMDIALSGERLQAIYGGRANRVLLRSRDGRRVNLPAHHLRPFIGHDGVHGTFRLDFSEDGRLLALQRLA
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-10.--.......20........30...--------....----.40.---------.......50...--------------------------.--..------...60-.----........-70---.........80...---------.....90..---------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTFN
R
V
V
C
G
-
K
L
S
--
W
F
I
QAGGSM
P
S
L
I
M
D
IALSG
E
R
--------
L
Q
A
I
----YGGR---------A
N
R
V
L
L
RS-RDG--------------------------
R
--
R
V------NL
P
A
--
H
----
H
L
R
P
F
IGH-D----GV
H
G
T
F
R
L
DFSED
G
---------
R
L
L
A
L
QRLA---------------
37
Fugue
76.94
18%
-99
- C2 -
3EJC
-
?
A:
[2-164]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
S
I
K
K
V
Y
R
GMKN
G
A
E
T
I
N
D
D
L
E
A
I
N
S
E
L
T
SGGNVVHKT
G
D
E
T
I
A
G
KKTFT
G
N
V
E
V
N
G
S
L
T
L
P
-
T
K
S
--
W
S
G
E
L
G
G
G
---
I
I
L
S
L
R
K
K
G
T
T
--------
V
E
Y
S
----
I
G
G
E
---------
I
S
S
S
I
L
A
N
-
S
N
L
--------------------------
V
--
N
R
------
S
V
P
N
--
E
FCPR
N
R
C
S
L
V
G
H
M
V
----
G
G
W
N
A
F
H
I
D
I
P
S
S
G
---------
V
C
Q
W
F
G
P
T
A
S
S
G
T
P
R
G
T
G
T
Y
P
I
D
H
39
Fugue
74.01
19%
-79
- C5 -
2QFE
17
A:
[10-148]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------HSSGLVPRGSPYT
L
S
K
R
I
N
G
K
W
S
G
Q
S
A
G
-
G
C
G
--
N
F
Q
E
T
H
K
N
N
P
I
Y
Q
F
H
I
E
K
T
G
P
L
--------
L
I
E
L
----
R
G
P
R
---------
Q
Y
S
V
G
F
E
V
-
V
T
V
STLGDPGPHGFLRKSSGDYRCG
F
C
Y
L
E
--
L
E
------
N
I
P
S
G
I
F
----
N
I
I
P
S
T
F
L
-
P
----
K
Q
E
G
P
F
F
L
D
F
N
S
I
I
---------
P
I
K
I
T
Q
L
Q
----------------
38
Fugue
71.98
27%
-103
* C5 *
2LU7
-
A:
[1-82]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
R
V
R
S
T
P
G
G
D
L
E
--
L
V
V
H
L
S
G
--
P
G
G
P
V
R
W
Y
K
D
G
E
R
--------
L
A
---------
S
---------
Q
G
R
V
Q
L
E
Q
-
A
G
A
--------------------------
R
----------------
Q
----
V
L
R
V
Q
G
A
R
-
S
----
G
D
A
G
E
Y
L
C
D
A
P
Q
D
S
---------
R
I
F
L
V
S
V
E
E
P--------------
12
PsiBlast_PDB
68.70
38%
-79
* C4 *
2ZF3
-
?
A:
[126-172]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
V
L
G
-
R
E
A
D
G
W
R
Y
Q
R
P
G
K
G
P
S
T
L
Y
L
D
A
A
S
G
T
P
--------
L
R
M
V
----
T
G
D
E
---------
A
S
R
A
S
L
R
------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
67.75
38%
-69
- C4 -
2ZF4
2
?
A:
[129-175]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
V
L
G
-
R
E
A
D
G
W
R
Y
Q
R
P
G
K
G
P
S
T
L
Y
L
D
A
A
S
G
T
P
--------
L
R
M
V
----
T
G
D
E
---------
A
S
R
A
S
L
R
------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
67.48
38%
-66
- C4 -
3BMZ
1
?
A:
[126-172]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
V
L
G
-
R
E
A
D
G
W
R
Y
Q
R
P
G
K
G
P
S
T
L
Y
L
D
A
A
S
G
T
P
--------
L
R
M
V
----
T
G
D
E
---------
A
S
R
A
S
L
R
------------------------------------------------------------------------------------------------------------------
35
Fugue
62.80
12%
-117
- C3 -
1E68
-
?
A:
[1-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MAKE
F
G
I
P
A
A
V
A
G
-
T
V
L
--
N
V
V
E
A
G
G
W
V
T
T
I
V
S
I
L
T
A
V
G
S
G
--------
G
L
S
L
----
L
A
A
A
---------------------------------------------------------------------------
G
R
-
E
----
S
I
K
A
Y
L
K
K
E
I
K
K
K
G
---------
K
R
A
V
I
A
W
-----------------
9
PsiBlast_PDB
62.58
37%
-57
- C9 -
3IUR
1
?
A:
[98-160]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
7
PsiBlast_PDB
61.79
37%
-55
- C9 -
3IUN
-
?
A:
[98-154]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
1
PsiBlast_PDB
61.71
37%
-44
- C9 -
3MUN
-
?
A:
[98-144]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
8
PsiBlast_PDB
61.45
37%
-56
- C9 -
3IUQ
-
?
A:
[98-159]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
10
PsiBlast_PDB
60.92
27%
-115
* C8 *
4B5E
3
?
A:
[34-88]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
--
W
F
R
Q
A
P
G
K
E
R
D
V
V
A
A
I
N
L
N
G
G
R
--------
T
Y
S
A
----
D
S
V
K
---------
G
R
F
T
I
S
R
D
-
N
D
K
--------------------------
N
--
T
V
------
Y
L
Q
M
--
S
----
N
L
K
P
---------------------------------------------------------
5
PsiBlast_PDB
60.92
37%
-54
- C9 -
3IUM
-
?
A:
[98-160]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
4
PsiBlast_PDB
60.71
37%
-54
- C9 -
3IUL
-
?
A:
[98-157]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
2
PsiBlast_PDB
60.71
37%
-47
- C9 -
3MUO
1
?
A:
[98-144]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
3
PsiBlast_PDB
60.68
37%
-53
- C9 -
3IUJ
-
?
A:
[95-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
6
PsiBlast_PDB
59.58
37%
-48
- C9 -
3IVM
-
?
A:
[98-144]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
Q
---------
N
Q
N
V
L
W
R
Q
-
Q
E
G
--------------------------
K
P
A
E
V
------
F
L
D
P
--
N
----
T
L
S
P
-----
D
----
G
T
T
A
L
D
Q
L
S
F
S
R
D
G
---------
R
I
L
A
--------------------
32
Fugue
58.35
19%
-75
* C3 *
2E12
-
?
A:
[1-93]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
----------------
K
Y
A
P
H
V
Y
T
E
Q
A
Q
I
A
T
L
E
H
W
--------
V
K
L
L
----
D
G
Q
-----------
E
R
V
R
I
E
L
-
D
D
G
--------------------------
S
--
M
I
A
G
T
VA
V
R
P
T
I
--
Q
----
T
Y
R
D
E
Q
E
R
-
E
----
G
S
N
G
Q
L
R
I
D
H
L
D
A
S
Q
E
P
Q
W
I
W
MD
R
I
V
A
V
H
P
M
P
---------------
36
Fugue
55.26
26%
-44
- C- -
3WPU
2
?
A:
[3-540]
GLQDGPEPTIHTQQAYAPEDD
F
T
A
K
WT
R
A
D
A
R
Q
L
Q
R
M
SDPTAPSRENSMPASVTMPTVPQDFPDMSNEQ
V
W
V
W
DTWPLTDEDA
N
Q
Y
S
V
NG
W
E
I
I
F
S
LVADRNLGFDDRHVF
A
K
I
G
Y
F
Y
R
P
AGVPAAERPENGGWTYGGLVFKEGVTGQIFEDQSFS
H
Q
T
Q
WSG
S
A
R
V
S
KNGEIK
L
F
F
T
D
V
A
F
Y
R
N
SDGTNI
K
P
Y
D
P
R
I
A
L
S
V
G
K
V
K
A
N
KKGVTLTGFN
K
V
T
D
L
L
QADGTYYQTGAQNEF
F
N
F
R
D
P
F
T
F
E
D
PAHPG
E
T
F
M
V
F
E
G
N
SAMQRET
A
T
C
N
EADLGYRQGDPYAET
V
D
D
V
N
A
S
GATY
Q
I
G
N
V
G
L
A
K
A
KNKQLT
E
W
E
F
L
P
PILSANCVTDQTER
P
Q
I
Y
F
K
DG
K
S
Y
L
F
T
I
S
H
RGTFAAG
L
D
G
P
E
G
V
Y
G
F
V
G
DGIRSD
Y
Q
P
L
NGGSGLALGNPTNLNFLGGQPFAPDFNQHPGHFQAYS
H
Y
V
M
P
GG
L
V
Q
S
F
I
D
T
I
-
G
-
T
H
D
--
D
F
V
R
G
G
T
L
A
P
T
V
K
M
D
I
G
V
G
G
D
P
--------
T
K
T
A
V
DYS
Y
G
S
E
GLGGWADIP
A
N
K
H
L
F
T
N
G
K
F
G
--------------------------
V
--
A
V
S
-----
D
E
A
A
--
Q
----
K
I
R
K
I
L
G
S
-
K
----
F
D
D
Y
L
D
G
K
P
V
S
A
T
V
---------
R
A
L
I
E
K
L
L
A
Q
Y-------------
34
Fugue
51.42
14%
-83
- C3 -
3U4E
3
?
G:
[1-122]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
T
F
K
L
A
A
C
V
-
T
L
R
C-
T
N
A
T
I
N
G
S
L
T
E
E
V
K
N
C
S
F
N
I
T
T
ELRDKKQK
A
Y
A
L
----
F
Y
R
P
---------
S
E
Y
I
L
I
N
C
-
Q
T
T
--------------------------
T
--
T
E
------
A
V
D
A
--
A
----
T
A
A
K
V
F
K
Q
-
Y
ANDN
G
I
D
G
E
W
T
Y
D
-
D
A
T
K
---------
T
F
T
V
T
E
G
L
E
VL-------------