@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : PA3851: (2016-02-21 )
MPAETPPLRPDADPPQCALPEARPDRDASTKLRAAVLGANDGLVSNLCLVMGVAGASMAHSSIVLTGMAGLVSGACSMALGEWLSVTNAREMASKRIAEEERLLRLCPNTETQELIDIFTAKGLSEVSARRVALQLMNDGRGALDTLSREALGIDPTELGGNPWNAAGTSFLLFSLGALVPVAPFLFLDGAAALVASLLSSLLALLFSGAVTARFTGRPLAFSALRQVLVGTLAAAFTYGLGTALGVGLG
Atome Classification :
(20 SA)
-----------------------------------------------------------.........10........20........30........40......------------------------------------------..50........60........70........-----80.....---.-..90---........------------100-......-...110.......120.----------....-----...130......-.140....--..--.---------150.......---160----.......-..170.......180..-----.....190----......-----..----------.200.......210.....-------...220.......230.......240.......250------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------MPAETPPLRPDADPPQCALPEARPDRDAST
K
L
R
A
A
V
LGAND
G
L
V
S
N
L
------------------------------------------
C
L
V
M
GVAGASMAH
S
S
I
V
L
T
G
M
A
G
L
V
S
G
A
C
S
M
A
-----
L
G
E
W
L
S
V---T-
N
A
R
E
---
M
A
S
K
R
I
A
E
------------
E
---
E
R
L
L
R
L-CPNT
E
T
Q
E
L
I
D
I
F
T
-AK----------
G
L
S
E
-----
V
S
A
R
R
V
A
L
Q
L
MN-DG
R
G
A
L
D
T
--
L
S
--
R
---------EALGI
D
P
T
EL---G------GNPWNAA-
G
T
S
F
L
L
F
S
LG
A
L
VPV
A
P
-----
F
L
FLD
G
------
A
A
A
L
V
A
-----
S
L
----------
L
S
S
L
L
A
L
L
FSG
A
-
V
T
A
RFT-------GR
P
L
A
F
S
A
L
R
Q
V
L
V
G
T
L
A
A
A
F
T
Y
GL
G
T
A
LGVGLG--------------------------------------------------
26
Fugue
73.67
18%
-60
- C1 -
2VIU
5
?
A:
[9-328]
------------------------------------------------------------
S
T
A
T
L
C
L
G
H
H
A
V
P
N
G
T
L
V
K
T
I
T
D
D
Q
I
E
V
T
N
A
T
E
L
V
Q
S
S
S
T
G
K
I
C
N
N
PHRILDGIDCT
L
I
D
A
L
L
GDPHCDVFQNETWD
L
F
V
E
R
SKAFSN
C
Y
P
Y
D
V
P
D
Y
A
S
L
R
S
L
V
A
S
S
G
T
L
E
F
I
T
E
G
F
T
----------
W
T
G
V
---
I
Q
N
G
G
S
---
N
A
C
K
R
G
P
G
------------
S
G
F
F
S
R
L
N
W
L
-
T
K
S
G
S
T
Y
P
V
L
N
V
T
M
-
P
N
NDN
F
D
K
L
Y
I
W
G
I
H
H
-----
P
S
T
N
Q
E
Q
T
S
L
Y
V
-
Q
A
S
G
R
V
T
V
--
S
T
--
R
---------
R
S
Q
Q
T
I
I
P
N
I
---
G
------
S
R
P
W
V
R
--
G
L
S
S
R
I
S
I
Y
W
T
I
V
K
P
G
D
-----
V
L
V
I
N
S
------
N
G
N
L
I
A
PR
G
Y
F
K
M
----------
R
T
G
K
S
S
I
M
R
S
D
A
-
P
I
D
T
C
I
SE
C
I
T
PN
G
S
I
P
N
D
K
P
F
Q
N
V
N
K
I
T
Y
G
A
C
P
K
Y
V
K
Q
N
T
L
K
L
A
T
G
M
R
N
V
P
E
KQT-----------------------------------------
19
Fugue
66.83
15%
-83
- C2 -
1FBA
3
ALF_DROME
A:
[1-360]
TT
Y
F
N
Y
P
S
K
E
L
Q
D
E
L
R
E
I
A
Q
K
I
V
APG
K
G
I
L
A
ADES
G
P
T
M
G
K
R
L
Q
D
I
GVENT
E
D
N
R
R
A
Y
R
Q
L
L
F
S
T
D
P
K
L
A
E
N
I
S
G
V
I
L
F
H
E
T
L
Y
Q
K
A
D
D
G
T
P
F
A
E
I
L
K
K
K
G
I
I
L
G
I
------------------------------------------
K
V
D
K
G
V
V
P
L
F
G
S
E
D
E
V
T
T
Q
G
L
D
D
L
A
A
R
C
A
Q
Y
K
K
D
GCD
F
A
K
W
R
C
V
L
K
I
G
---
K
N
---
T
P
S
Y
Q
S
I
L
------------
E
N
A
-
N
V
L
A
R
Y
-
A
S
I
C
Q
S
Q
R
I
V
P
I
V
E
-
P
E
----------
V
L
P
D
GDHD
L
D
R
A
Q
K
V
T
E
T
V
L
A
-
A
V
Y
K
A
L
S
D
H
H
V
Y
--
L
---------
E
G
T
L
L
K
P
N
M
V
TAG
Q
------
S
-
A
K
K
N
T
-
P
E
E
I
A
L
A
T
V
Q
A
L
R
R
T
V
P
AAVT
G
V
T
F
L
S
G
GQS
E
E
E
A
T
V
N
L
S
-----
A
I
N
N
VPLIRP
W
A
L
T
F
S
Y
G
R
A
L
Q
A
S
-
V
L
R
A
W
A
-------
G
K
K
E
N
I
A
A
G
Q
N
E
L
L
K
R
A
K
A
N
G
D
A
A
Q
G
K
Y
V
-
A
G
S
A
GAGSGSLFVANHAY------------------------------------
23
Fugue
66.31
20%
-62
- C2 -
2IGS
4
?
A:
[6-219]
------------------------------------------------------INIYQ
N
P
G
Q
S
L
A
N
I
Y
K
G
F
A
R
Q
C
N
-
P
G
F
V
F
P
E
A
Q
T
I
E
A
W
D
I
P
L
R
L
H
P
E
F
I
P
G
---------------------------------------------------------------------
G
D
I
S
K
A
-----
D
Q
Q
Y
S
T
L
---
L
-
A
Q
E
I
---
A
N
G
V
T
I
G
F
------------
R
M--
V
N
E
K
E
R
-
V
C
N
V
E
I
L
P
L
L
T
--
S
M
A
Q
----------
N
L
D
R
-----
I
K
A
R
F
---------
G
S
G
Y
L
D
R
--
F
K
--
G
---------
S
P
-
N
V
Y
P
T
D
V
---
G
F
S
T
D
AS
G
G
I
S
Q
E
S
-
G
---
L
L
V
S
Y
G
V
N
L
R
T
L
T
-----------------
P
G
T
W
Q
A
M----
T
L
----------
P
E
D
I
K
A
L
V
G
P
G
V
G
L
R
L
D
A
P
-------
N
F
S
D
V
F
N
T
I
K
S
G
L
R
Y
T
T
A
V
T
L
L
L
A
Y
F
A
A
I
G
S
-----------------------------------------------------
24
Fugue
58.28
14%
-43
- C2 -
3B21
-
?
A:
[21-212]
------------------------------------------------------------
N
V
N
V
K
K
L
L
E
S
L
N
S
K
S
--
L
G
D
M
D
K
D
S
E
L
A
A
T
L
Q
K
M
I
---
N
P
S
G
G
D
G
N
------------------------------------------
C
------
S
G
C
A
L
H
A
C
M
A
M
L
G
Y
-
G
V
R
E
A
P
V
P
N
E
-----
I
S
E
Y
M
T
G
---
F
-
F
H
R
H
---
L
E
Q
I
----------------
D
---
S
E
G
I
V
S
-
H
P
N
E
T
Y
S
K
F
R
E
R
I
A
-
E
N
----------
I
L
Q
N
-----
T
S
K
G
S
V
V
M
I
S
I
E
-
Q
A
T
H
W
I
A
G
--
F
N
DG
E
---------
K
I
M
F
L
D
V
Q
T
G
---
K
------
G
-------------
F
N
L
Y
D
P
V
E
K
S
P
-----
D
A
F
V
D
E
-----------------------------
N
S
S
V
Q
V
I
H
V
S
D
Q
-
E
F
D
H
Y
A
--------
N
S
S
S
W
K
S
K
R
L
C
------------------------------------------------------------------------
20
Fugue
58.16
11%
-52
- C2 -
1V72
2
?
A:
[6-350]
--------------------------------------RPPALGFSSDNIAGAS
P
E
V
A
Q
A
L
V
K
H
S
S
G
Q
A
G
P
Y
G
T
D
E
L
T
A
Q
V
K
R
K
F
C
E
I
F
E
R
D
V
E
V
F
L
V
P
T
G
T
A
A
N
A
------------------------------------------
L
C
L
S
A
M
T
P
P
W
G
N
I
Y
C
H
P
A
S
H
I
N
N
D
E
C
G
A
P
E
F
F
-----
S
N
G
A
K
L
M
---
T
-
V
D
G
P
AAK
L
D
I
V
R
L
R
E
R
T
R
EKVGDVH
T
T
Q
---
P
A
C
V
S
I
-
T
Q
A
T
E
V
G
S
I
Y
T
L
D
E
-
I
E
----------
A
I
G
D
-----
V
C
K
S
S
-
S
L
G
L
H
M
-
D
G
S
R
F
A
N
A
--
L
V
--
S
L
GCSPAEMT
W
K
A
G
V
D
A
L
S
F
---
G
------
A
T
K
N
G
V
L
A
A
E
A
I
V
L
F
N
T
S
L
A
T
E
M
S
Y
-----
R
R
K
R
A
G
------
H
L
S
S
K
M
-----
R
F
----------
L
S
A
Q
I
D
A
Y
L
T
D
D
-
L
W
L
R
N
A
-------
R
K
A
N
A
A
A
Q
R
L
A
Q
G
L
E
G
L
G
G
V
E
V
L
G
G
T
E
A
N
I
L
F
C
R
L
D
S
A
M
I
D
A
L
L
K
A
G
F
G
F
Y
H
DRWGPN
V
V
R
F
V
T
S
FATT
A
E
D
V
D
H
L
L
N
Q
V
R
L
A
A
27
Fugue
44.51
26%
-29
* C3 *
1IXS
-
A:
[13-62]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
E
A
A
E
E
A
V
M
A
L
A
-
A
L
----------
G
F
K
E
-----
A
Q
A
R
A
V
V
L
D
L
L
A
Q
N
P
K
A
R
A
Q
D
--
L
I
--
K
---------
E
A
L
K
R
L
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
39.67
34%
11
- C3 -
4JPO
-
PRS7_YEAST
C:
[25-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
K
S
---
M
S
V
E
R
G
I
R
------------
W
---
E
L
I
S
R
L
-
C
P
N
S
T
G
A
E
L
R
S
V
C
T
-
E
A
----------
G
M
F
A
-----
I
R
A
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
38.75
18%
5
- C3 -
1Z2I
-
?
A:
[13-45]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
D
E
L
E
R
F
C
R
A
V
F
L
-
A
V
----------
G
T
D
E
-----
E
T
A
D
A
A
T
R
A
M
M
H
-
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
37.99
34%
24
- C3 -
4A3V
1
PRS7_YEAST
B:
[20-63]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
K
S
---
M
S
V
E
R
G
I
R
------------
W
---
E
L
I
S
R
L
-
C
P
N
S
T
G
A
E
L
R
S
V
C
T
-
E
A
----------
G
M
F
A
-----
I
R
A
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
37.94
22%
2
- C3 -
1WTJ
-
PY2CR_PSEUB
A:
[15-46]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
P
Q
L
I
D
L
L
R
R
I
F
V
-
V
H
----------
G
T
S
P
-----
E
V
A
D
V
L
A
E
N
C
A
S
-
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
37.31
34%
25
- C3 -
4CR4
-
PRS7_YEAST
H:
[392-435]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
K
S
---
M
S
V
E
R
G
I
R
------------
W
---
E
L
I
S
R
L
-
C
P
N
S
T
G
A
E
L
R
S
V
C
T
-
E
A
----------
G
M
F
A
-----
I
R
A
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
36.92
15%
4
- C3 -
3ERM
-
?
A:
[21-71]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
D
R
K
------------
L
---
A
D
A
H
D
Q
-
M
L
E
-
L
A
E
L
L
T
D
V
L
I
-
K
N
VP--------
G
L
S
E
-----
K
H
A
E
D
A
S
I
Y
M
A
K
-
N
R
A
V
F
A
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
36.09
34%
21
- C3 -
5A5B
-
?
H:
[392-435]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
K
S
---
M
S
V
E
R
G
I
R
------------
W
---
E
L
I
S
R
L
-
C
P
N
S
T
G
A
E
L
R
S
V
C
T
-
E
A
----------
G
M
F
A
-----
I
R
A
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
36.03
34%
21
- C3 -
4CR3
-
PRS7_YEAST
H:
[392-435]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
K
S
---
M
S
V
E
R
G
I
R
------------
W
---
E
L
I
S
R
L
-
C
P
N
S
T
G
A
E
L
R
S
V
C
T
-
E
A
----------
G
M
F
A
-----
I
R
A
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
34.20
29%
-2
- C3 -
1IXS
-
A:
[14-44]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
E
A
A
E
E
A
V
M
A
L
A
-
A
L
----------
G
F
K
E
-----
A
Q
A
R
A
V
V
L
D
L
L
A
-
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
32.00
34%
38
- C3 -
4CR2
-
PRS7_YEAST
H:
[392-435]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
S
K
S
---
M
S
V
E
R
G
I
R
------------
W
---
E
L
I
S
R
L
-
C
P
N
S
T
G
A
E
L
R
S
V
C
T
-
E
A
----------
G
M
F
A
-----
I
R
A
R
R
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
29.24
12%
-5
- C2 -
4DHX
-
GANP_HUMAN
A:
[1162-1233]
------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
L
S
E
L
S
Q
G
L
A
V
E
L
M
E
R
V
-----
M
M
E
F
V
R
E
---
T
-
C
S
Q
E
---
L
K
N
A
V
E
T
D
------------
Q
---
R
V
R
V
A
R
-
C
C
E
D
V
C
A
H
L
V
D
L
F
L
-
V
E
----------
E
I
F
Q
-----
T
A
K
E
T
L
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
27.04
9%
26
- C3 -
3SK7
-
?
A:
[142-176]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
I
T
N
N
N
T
S
R
K
Q
Q
M
V
E
Q
V
M
V
-
R
M
----------
G
F
P
S
-----
D
I
I
E
K
V
T
H
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
25.98
6%
40
- C3 -
1LRR
2
SEQA_ECOLI
A:
[96-130]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
I
T
N
T
N
T
G
R
K
C
S
M
I
E
H
I
M
Q
-
S
M
----------
Q
F
P
A
-----
E
L
I
E
K
V
C
G
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
25.70
6%
42
- C3 -
1J3E
2
SEQA_ECOLI
A:
[80-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
V
I
T
N
T
N
T
G
R
K
C
S
M
I
E
H
I
M
Q
-
S
M
----------
Q
F
P
A
-----
E
L
I
E
K
V
C
G
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------