@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0674: (2016-03-17 )
MPKSEIRKLLQEIKKQVDNPGNSSTTEIKKMASEAGIDEQTAEEIYHLLTEFYQAVEEHGGIEKYMHSNISWLKIELELLSACYQIAILEDMKVLDISEMLSLNDLRIFPKTPSQLQNTYYKLKKELIQVEDIPKNKPGRKRKTQKNTKKEKTNIFGKVVPAEFKAPASIKEQISYDKSREKNLVDLLSGVKSNVQLLSENQGEENNVYDLLKSIYSLSSLAVQKEELDKKYQDLQTKCQELEQENSYLKQQNETMTDSFHTLVLQVADFAYASDLDQIQALPLFSQQLVVTLNQLGVFKENYKQM

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_C_3(3FDQ)
MOGR_LISMO
[Raw transfer]

-

NACID_C_3(3FDQ)
MOGR_LISMO
[Raw transfer]

-

NACID_C_3(3FDQ)
MOGR_LISMO
[Raw transfer]

-

NACID_C_3(3FDQ)
MOGR_LISMO
[Raw transfer]

-

25 Fugue 99.80100%-102 - C7 -3FDQ 7.4 MOGR_LISMO
4 PsiBlast_CBE 99.75100%-102 - C7 -3FDQ 7.9 MOGR_LISMO
5 HHSearch 99.55100%-102 - C7 -3FDQ 7.4 MOGR_LISMO
1 PsiBlast_PDB 99.55100%-102 - C7 -3FDQ 7.4 MOGR_LISMO
26 Fugue 60.1916% -34 - C5 -3H4C - ? -
32 Fugue 50.6820% 32 - C2 -2W0C - SPIKE_BPPM2 -
14 HHSearch 46.5821% -35 - C7 -2YQK - -
33 Fugue 46.4811% 22 - C6 -1D5Y - ROB_ECOLI -
31 Fugue 43.9510% 19 - C4 -3CRA - MAZG_ECOLI -
12 HHSearch 42.9916% -52 - C7 -2JML - ? -
15 HHSearch 40.5714% -48 - C7 -1X58 - -
9 HHSearch 39.9126% 124 - C7 -1HJB - CEBPB_HUMAN -
20 HHSearch 39.5321% 148 - C7 -1JNM - JUN_HUMAN -
19 HHSearch 39.3925% 114 - C7 -3HE5 - ? -
6 HHSearch 38.1220% 96 - C7 -2JEE - ZAPB_ECOLI -
13 HHSearch 37.7522% 148 - C7 -2WT7 - -
24 HHSearch 37.2919% 116 * C7 *1T2K - ATF2_HUMAN -
21 HHSearch 36.7924% 168 - C7 -2JEE - ZAPB_ECOLI -
18 HHSearch 36.3323% 198 - C7 -3S9G - HEXI1_HUMAN -
11 HHSearch 35.9918% 133 - C7 -2YY0 - MYCBP_HUMAN -