@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1505: (2016-03-25 )
MTKVLTFENISYWYKTKDESILNDINYDFEAGVFYTVVGSSGSGKTTFLSLAGGLDTQKEGDIYYKGSSLKSIGLQQFRNKYVSIVFQSYNLLTYMTALQNVTTAMEITHVNQPDKKAFALSMLEKVGITEEMARQKVLTLSGGQQQRVSIARALCCETELIVADEPTGNLDERTSKEVVTLFQDLAHKEGKCVIMVTHDPEIAKVSDVKLTLKNGSFVEKKQSMNSLINS

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_J_5(3C41)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ATP_A_5(1B0U)
HISP_SALTY
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ADP_D_7(4HLU)
ECFA1_THEMA
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ADP_C_11(4HLU)
ECFA1_THEMA
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



ATP_C_3(1VCI)
?
[Raw transfer]
1 PsiBlast_PDB 89.2535% -99 - C1 -1L2T - Y796_METJA -
22 PsiBlast_CBE 88.6734%-102 - C1 -3TIF 6.5 Y796_METJA
41 PsiBlast_CBE 88.3937%-107 - C1 -1B0U 4.3 HISP_SALTY
21 PsiBlast_CBE 88.3035% -98 - C1 -1L2T 6.6 Y796_METJA
3 PsiBlast_PDB 87.9334%-100 - C1 -3TIF 5.9 Y796_METJA
2 PsiBlast_PDB 87.7235% -97 - C1 -1F3O 5.8 Y796_METJA
96 HHSearch 84.7836% -97 - C1 -2PCJ - LOLD_AQUAE -
5 PsiBlast_PDB 84.3436%-110 - C1 -2PCL - LOLD_AQUAE -
23 PsiBlast_CBE 83.4736%-109 - C1 -2PCJ - LOLD_AQUAE -
4 PsiBlast_PDB 82.6636%-106 - C1 -2PCJ - LOLD_AQUAE -
10 PsiBlast_PDB 82.2938%-103 - C1 -2OUK - ? -
26 PsiBlast_CBE 82.2435% -92 - C1 -4U02 - ? -
25 PsiBlast_CBE 82.1035% -95 - C1 -4U02 - ? -
8 PsiBlast_PDB 81.8938%-101 - C1 -2OLJ - ? -
32 PsiBlast_CBE 81.6238%-100 - C1 -2OLK 4.1 ?
99 HHSearch 81.4433% -92 - C1 -3TIF - Y796_METJA -
98 HHSearch 80.9435% -97 - C1 -2OLJ - ? -
6 PsiBlast_PDB 80.7135% -95 - C1 -4U00 - ? -
27 PsiBlast_CBE 80.7038% -98 - C1 -3C4J 3.4 ?
12 PsiBlast_PDB 80.6338% -98 - C1 -3C4J 5.5 ?
34 PsiBlast_CBE 80.4138% -96 - C1 -2OLK 4.3 ?
39 PsiBlast_CBE 80.2233%-113 - C1 -4HLU 4.9 ECFA1_THEMA
40 PsiBlast_CBE 79.6733%-113 - C1 -4HLU 5.5 ECFA1_THEMA
36 PsiBlast_CBE 79.5038% -96 - C1 -3C41 4.7 ?
11 PsiBlast_PDB 79.1338% -95 - C1 -2Q0H 4.4 ?
17 PsiBlast_PDB 79.0033%-100 - C1 -4YMV 5.0 ?
33 PsiBlast_CBE 78.8338% -93 - C1 -2OLK 4.6 ?
9 PsiBlast_PDB 78.7138% -95 - C1 -2OLK 4.6 ?
38 PsiBlast_CBE 78.6833%-101 - C1 -4YMU 4.6 ?
16 PsiBlast_PDB 78.4333%-102 - C1 -4YMU 5.1 ?
37 PsiBlast_CBE 77.6633% -99 - C1 -4YMV 4.9 ?
35 PsiBlast_CBE 77.5838% -93 - C1 -2OLJ 4.1 ?
28 PsiBlast_CBE 77.5438% -92 - C1 -2Q0H 4.7 ?
13 PsiBlast_PDB 77.4938% -90 - C1 -3C41 5.0 ?
44 PsiBlast_CBE 55.5532%-106 - C1 -1VCI 3.1 ?