@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2824: (2016-04-07 )
VFNIQTFNAIAKEGLKTFDLEKYVIDANQPADGILLRSYNLHDFDFPETVKAVARAGAGVNNIPVENCSEKGIVVFNTPGANANAVKELVLASLFVSARPILEGTEWVKELPAEDDVEQKVEAGKKAFAGTELAGKKLGIIGLGAIGALVANDALSLGMDVVGYDPFVSVDTAWRISKEVERAMTIEEVLATCDYLTVHVPLTDKTRGMFNADTLQLVKDNAVLLNFSRGELVDSASVKEALDDGLLRLYITDFATKELLNHKKVHVFPHLGASTEEAETNCAKMAAKELQSYLETGSIKNSVNFPNVEMPYNGHPRIGICHKNIPNMVGQITTELGKYSLNILDMINRSKNEYAYTLIDIDKETQANLEQLKQDLLAVQGVLRVRVIEPLGVTV

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_5(2G76)
SERA_HUMAN
[Raw transfer]



NAD_A_5(2G76)
SERA_HUMAN
[Raw transfer]



NAD_B_6(2G76)
SERA_HUMAN
[Raw transfer]



3PG_A_3(4NJM)
?
[Raw transfer]



NAD_D_4(1WWK)
?
[Raw transfer]



FMT_A_4(4NJO)
?
[Raw transfer]



HPV_B_6(3DDN)
SERA_MYCTU
[Raw transfer]



GOL_A_14(3JTM)
FDH_ARATH
[Raw transfer]



TRS_A_3(4NFY)
?
[Raw transfer]
44 HHSearch 90.1228% -99 - C2 -1YGY - SERA_MYCTU -
43 HHSearch 89.7828% -84 - C2 -3K5P - ? -
42 HHSearch 89.2229% -91 - C2 -1SC6 - SERA_ECOLI -
13 PsiBlast_PDB 85.8328% -89 - C2 -3K5P - ? -
15 PsiBlast_PDB 83.2929% -94 - C2 -1YBA - SERA_ECOLI -
9 PsiBlast_PDB 82.7029% -93 - C2 -2P9C - SERA_ECOLI -
63 Fugue 82.5327% -75 - C2 -1YGY - SERA_MYCTU -
59 HHSearch 82.2032% -98 - C2 -1WWK - ? -
5 PsiBlast_PDB 81.5729% -89 - C2 -1PSD - SERA_ECOLI -
14 PsiBlast_PDB 81.4928% -96 - C2 -1SC6 - SERA_ECOLI -
10 PsiBlast_PDB 81.3729% -90 - C2 -2P9E - SERA_ECOLI -
11 PsiBlast_PDB 80.9029% -90 - C2 -2PA3 - SERA_ECOLI -
12 PsiBlast_PDB 80.8129% -90 - C2 -2P9G - SERA_ECOLI -
45 HHSearch 80.1833% -95 - C2 -2G76 9.1 SERA_HUMAN
6 PsiBlast_PDB 79.0129%-101 - C2 -4NFY 1.9 ?
17 PsiBlast_PDB 78.9036%-103 - C2 -1WWK - ? -
2 PsiBlast_PDB 78.7133% -97 - C2 -3DDN - SERA_MYCTU -
25 PsiBlast_CBE 78.5436%-102 - C2 -1WWK 8.3 ?
3 PsiBlast_PDB 78.4433% -98 - C2 -1YGY - SERA_MYCTU -
7 PsiBlast_PDB 78.1929% -98 - C2 -4NJM 3.6 ?
22 PsiBlast_CBE 76.8833% -89 - C2 -3DDN 3.7 SERA_MYCTU
21 PsiBlast_CBE 76.6735% -99 - C2 -2G76 7.7 SERA_HUMAN
1 PsiBlast_PDB 75.0535% -96 - C2 -2G76 9.0 SERA_HUMAN