@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs2103: (2015-12-13 )
MTDNSNIRVVVGMSGGVDSSVTALLLKEQGYDVIGVFMKNWDDTDEFGVCTATEDYKDVAAVADQIGIPYYSVNFEKEYWDRVFEYFLAEYRAGRTPNPDVMCNKEIKFKAFLDYAMTLGADYVATGHYAQVTRDENGIVHMLRGADNNKDQTYFLSQLSQEQLQKTLFPLGHLQKPEVRRIAEEAGLATAKKKDSTGICFIGEKNFKDFLGQYLPAQPGRMMTVDGRDMGEHAGLMYYTIGQRGGLGIGGQHGGDNKPWFVVGKDLSKNILYVGQGFYHDSLMSTSLTASEIHFTRDMPNEFKLECTAKFRYRQPDSKVTVYVKGNQARVVFDDLQRAITPGQAVVFYNEQECLGGGMIDQAYRDDKICQYI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_A_3(2HMA)
MNMA_STRPN
[Raw transfer]



AMP_C_7(2DEU)
MNMA_ECOLI
[Raw transfer]



AMP_D_8(2DEU)
MNMA_ECOLI
[Raw transfer]
1 PsiBlast_PDB 91.3885%-103 - C1 -2HMA 7.8 MNMA_STRPN
31 HHSearch 73.8757% -88 * C1 *2DER - MNMA_ECOLI -
2 PsiBlast_PDB 73.3058% -86 - C1 -2DER - MNMA_ECOLI -
56 Fugue 72.7055% -84 - C1 -2DER - MNMA_ECOLI -
22 PsiBlast_CBE 72.0858% -93 - C1 -2DER - MNMA_ECOLI -
21 PsiBlast_CBE 71.2358% -90 - C1 -2DEU 4.7 MNMA_ECOLI
3 PsiBlast_PDB 70.7358% -93 - C1 -2DET - MNMA_ECOLI -
4 PsiBlast_PDB 70.5958% -90 - C1 -2DEU 4.9 MNMA_ECOLI
48 HHSearch 42.4525% -91 - C1 -2YWB - GUAA_THET8 -
40 HHSearch 41.8620% -95 - C1 -2NZ2 - ASSY_HUMAN -
9 PsiBlast_PDB 40.4632%-112 - C1 -2E18 - NADE_PYRHO -
36 HHSearch 40.1022% -60 - C1 -3VRH - ? -
8 PsiBlast_PDB 39.7446%-139 - C1 -2NZ2 - ASSY_HUMAN -
33 HHSearch 38.4820% -81 - C1 -1KOR - ASSY_THET8 -
13 PsiBlast_PDB 38.2042%-126 - C1 -1VL2 - ASSY_THEMA -
26 PsiBlast_CBE 38.1632%-109 - C1 -2E18 - NADE_PYRHO -
42 HHSearch 37.4619% -69 - C1 -3K32 - Y690_METJA -
5 PsiBlast_PDB 36.6427%-105 - C1 -3VRH - ? -
39 HHSearch 36.0918% -69 - C1 -3BL5 - QUEC_BACSU -
63 Fugue 34.1220% -48 - C1 -3VRH - ? -