@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PF00215_PYRF_Y: (2014-09-01 )
MSKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAYLRRCGQQN

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CNU_B_5(3EWZ)
UMPS_HUMAN
[Raw transfer]




BMP_G_7(1DQX)
PYRF_YEAST
[Raw transfer]




BMP_E_5(1DQX)
PYRF_YEAST
[Raw transfer]




5FU_B_5(3G3D)
UMPS_HUMAN
[Raw transfer]




6CN_B_5(3EX2)
UMPS_HUMAN
[Raw transfer]




5FU_B_4(3MW7)
UMPS_HUMAN
[Raw transfer]




TKW_B_11(4HKP)
UMPS_HUMAN
[Raw transfer]




16B_B_7(4HIB)
UMPS_HUMAN
[Raw transfer]




U1P_B_5(3EWW)
UMPS_HUMAN
[Raw transfer]




U5P_B_4(3BGJ)
UMPS_HUMAN
[Raw transfer]




5BU_B_4(2QCG)
UMPS_HUMAN
[Raw transfer]




U5P_B_5(2QCN)
UMPS_HUMAN
[Raw transfer]




6CN_B_5(3EX1)
UMPS_HUMAN
[Raw transfer]




BMP_H_8(1DQX)
PYRF_YEAST
[Raw transfer]




UP6_B_4(3GDL)
PYRF_YEAST
[Raw transfer]




UP6_A_3(3GDL)
PYRF_YEAST
[Raw transfer]




NUP_B_12(3N3M)
?
[Raw transfer]




XMP_B_6(3BVJ)
UMPS_HUMAN
[Raw transfer]




UP6_B_6(3GDT)
PYRF_YEAST
[Raw transfer]




BMP_G_7(1DQX)
PYRF_YEAST
[Raw transfer]




UP6_B_4(3GDL)
PYRF_YEAST
[Raw transfer]




UP6_A_3(3GDL)
PYRF_YEAST
[Raw transfer]




U1P_A_4(3EWW)
UMPS_HUMAN
[Raw transfer]




U5P_A_3(3EX1)
UMPS_HUMAN
[Raw transfer]




6CN_A_3(3EX2)
UMPS_HUMAN
[Raw transfer]




5FU_A_3(3G3D)
UMPS_HUMAN
[Raw transfer]




UP6_D_8(3GDT)
PYRF_YEAST
[Raw transfer]




UP6_C_7(3GDT)
PYRF_YEAST
[Raw transfer]




5IU_B_7(2QCH)
UMPS_HUMAN
[Raw transfer]




C5P_B_4(2YYU)
PYRF_GEOKA
[Raw transfer]




27 PsiBlast_CBE 97.1398%-103 - C2 -1DQX 4.7 PYRF_YEAST
26 PsiBlast_CBE 97.0298%-103 - C2 -1DQX 3.7 PYRF_YEAST
24 PsiBlast_CBE 96.8899%-117 - C2 -3GDT 2.9 PYRF_YEAST
22 PsiBlast_CBE 96.88100%-109 - C2 -3GDL 6.7 PYRF_YEAST
28 PsiBlast_CBE 96.7898%-102 - C2 -1DQX 3.6 PYRF_YEAST
5 PsiBlast_PDB 96.6998%-105 - C2 -1DQX - PYRF_YEAST
23 PsiBlast_CBE 96.6499%-118 - C2 -3GDT 3.3 PYRF_YEAST
21 PsiBlast_CBE 96.38100%-110 - C2 -3GDL 6.6 PYRF_YEAST
25 PsiBlast_CBE 95.9599%-115 - C2 -3GDT 3.9 PYRF_YEAST
39 HHSearch 76.5251%-103 - C2 -3G3D 4.5 UMPS_HUMAN
13 PsiBlast_PDB 76.3451%-108 - C2 -4HKP 3.1 UMPS_HUMAN
9 PsiBlast_PDB 75.9851%-108 - C2 -3BVJ 4.9 UMPS_HUMAN
12 PsiBlast_PDB 75.8751%-111 - C2 -4HIB 3.2 UMPS_HUMAN
41 HHSearch 75.8351%-104 - C2 -3EWW 4.6 UMPS_HUMAN
8 PsiBlast_PDB 75.7051%-108 - C2 -3BGJ 4.7 UMPS_HUMAN
11 PsiBlast_PDB 75.6751%-112 - C2 -3MW7 3.2 UMPS_HUMAN
19 PsiBlast_PDB 75.5351%-108 - C2 -3EX1 6.6 UMPS_HUMAN
20 PsiBlast_PDB 75.4251%-109 - C2 -3EX2 6.5 UMPS_HUMAN
16 PsiBlast_PDB 75.0551%-109 - C2 -2QCH 3.3 UMPS_HUMAN
17 PsiBlast_PDB 75.0151%-109 - C2 -2QCN 3.2 UMPS_HUMAN
15 PsiBlast_PDB 74.5151%-108 - C2 -2QCG 3.4 UMPS_HUMAN
18 PsiBlast_PDB 74.2651%-108 - C2 -3EWZ 7.0 UMPS_HUMAN