@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Wbm0099: (2015-11-28 )
MGDTPFKATSMEDLNDTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLFPKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLENALEALIGAIYIDGGFANVKKFVTKHWEERAKGMLSLPQDPKTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEKINNSEKTI

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A_C_12(4M30)
RNC_AQUAE
[Raw transfer]




C_C_9(4M2Z)
RNC_AQUAE
[Raw transfer]




A_D_16(4M30)
RNC_AQUAE
[Raw transfer]




C_D_12(4M2Z)
RNC_AQUAE
[Raw transfer]




NACID_C_3(3ADL)

[Raw transfer]

-

NACID_D_3(2NUG)
RNC_AQUAE
[Raw transfer]

-

NACID_D_3(2NUG)
RNC_AQUAE
[Raw transfer]

-

NACID_D_3(2NUG)
RNC_AQUAE
[Raw transfer]

-

NACID_E_3(1YYK)
RNC_AQUAE
[Raw transfer]

-

21 PsiBlast_CBE 94.0334%-100 - C3 -4M30 3.1 RNC_AQUAE
24 PsiBlast_CBE 93.4534% -97 - C3 -2NUF - RNC_AQUAE -
5 PsiBlast_PDB 93.1334% -93 - C3 -2NUF - RNC_AQUAE -
22 PsiBlast_CBE 93.1234%-103 - C3 -4M2Z 2.8 RNC_AQUAE
8 PsiBlast_PDB 92.9534% -95 - C3 -4M30 3.2 RNC_AQUAE
2 PsiBlast_PDB 92.8634%-104 - C3 -1YYK - RNC_AQUAE -
23 PsiBlast_CBE 92.6334% -97 - C3 -2NUG 3.9 RNC_AQUAE
26 PsiBlast_CBE 92.3634% -89 - C3 -1YYK 3.8 RNC_AQUAE
6 PsiBlast_PDB 91.4134% -98 - C3 -2NUG 5.3 RNC_AQUAE
27 PsiBlast_CBE 91.3033% -99 - C3 -1YZ9 - RNC_AQUAE -
29 PsiBlast_CBE 90.8133% -97 - C3 -2EZ6 - RNC_AQUAE -
12 PsiBlast_PDB 90.4033% -98 - C3 -2EZ6 - RNC_AQUAE -
9 PsiBlast_PDB 90.3633% -95 - C3 -1YZ9 - RNC_AQUAE -
13 PsiBlast_PDB 90.2933% -96 - C3 -1RC7 - RNC_AQUAE -
50 HHSearch 89.6135% -93 - C3 -2NUG 5.3 RNC_AQUAE
3 PsiBlast_PDB 89.2334% -92 - C3 -1YYW - RNC_AQUAE -
7 PsiBlast_PDB 88.9934% -91 - C3 -4M2Z 2.8 RNC_AQUAE
4 PsiBlast_PDB 88.9634% -93 - C3 -2NUE - RNC_AQUAE -
28 PsiBlast_CBE 88.7733% -92 - C3 -1YYO - RNC_AQUAE -
11 PsiBlast_PDB 88.3233% -99 - C3 -1YYO - RNC_AQUAE -
67 HHSearch 41.7231% -34 - C3 -3ADL 3.6