@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA1422: (2016-03-25 )
MKKIVLYGGQFNPIHTAHMIVASEVFHELQPDEFYFLPSFMSPLKKHNNFIDVQHRLTMIQMIIDELGFGDICDDEIKRGGQSYTYDTIKAFKEQHKDSELYFVIGTDQYNQLEKWYQIEYLKEMVTFVVVNRDKNSQNVENAMIAIQIPRVDISSTMIRQRVSEGKSIQVLVPKSVENYIKGEGLYEH

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DND_H_8(1KAQ)
NADD_BACSU
[Raw transfer]



DND_D_4(2H29)
NADD_STAAC
[Raw transfer]



DND_C_3(2H29)
NADD_STAAC
[Raw transfer]



NXX_A_8(2QTR)
NADD_BACAC
[Raw transfer]



NXX_B_9(2QTR)
NADD_BACAC
[Raw transfer]



NXX_A_8(2QTR)
NADD_BACAC
[Raw transfer]



NXX_C_10(2QTR)
NADD_BACAC
[Raw transfer]



DND_D_4(2H29)
NADD_STAAC
[Raw transfer]



DND_I_9(1KAQ)
NADD_BACSU
[Raw transfer]



DND_B_7(3E27)
?
[Raw transfer]



DND_A_5(3E27)
?
[Raw transfer]



DND_C_9(3E27)
?
[Raw transfer]



DND_J_10(1KAQ)
NADD_BACSU
[Raw transfer]



DND_D_11(3E27)
?
[Raw transfer]



DND_K_11(1KAQ)
NADD_BACSU
[Raw transfer]



DND_G_7(1KAQ)
NADD_BACSU
[Raw transfer]



GOL_B_8(2QTM)
?
[Raw transfer]



LJZ_A_5(3MLB)
NADD_BACAC
[Raw transfer]



GOL_A_9(2QTN)
?
[Raw transfer]



FMT_B_7(3MLB)
NADD_BACAC
[Raw transfer]



FMT_A_4(3MLB)
NADD_BACAC
[Raw transfer]



GOL_A_6(2QTM)
?
[Raw transfer]



LJZ_A_5(3MLB)
NADD_BACAC
[Raw transfer]



NCN_B_5(2QTN)
?
[Raw transfer]



JJZ_A_3(3MLA)
NADD_BACAC
[Raw transfer]



CIT_A_5(1YUM)
NADD_PSEAE
[Raw transfer]



JJZ_A_3(3MLA)
NADD_BACAC
[Raw transfer]



DZ9_A_3(3HFJ)
?
[Raw transfer]



CIT_E_5(1K4M)
NADD_ECOLI
[Raw transfer]



DZ9_A_3(3HFJ)
?
[Raw transfer]
81 HHSearch 94.8999%-148 - C3 -2H29 12.0 NADD_STAAC
1 PsiBlast_PDB 94.6798%-148 - C3 -2H29 12.0 NADD_STAAC
21 PsiBlast_CBE 94.5598%-145 - C3 -2H29 12.2 NADD_STAAC
5 PsiBlast_PDB 77.1437%-145 - C3 -3MLA 5.0 NADD_BACAC
36 PsiBlast_CBE 76.9737%-144 - C3 -3HFJ 4.6 ?
6 PsiBlast_PDB 76.5537%-146 - C3 -3MLB 4.9 NADD_BACAC
23 PsiBlast_CBE 76.1937%-148 - C3 -3DV2 - ? -
2 PsiBlast_PDB 76.1837%-145 - C3 -3DV2 - ? -
8 PsiBlast_PDB 75.9937%-147 - C3 -2QTM 2.7 ?
27 PsiBlast_CBE 75.8737%-156 - C3 -3MMX - NADD_BACAC -
4 PsiBlast_PDB 75.8237%-143 - C3 -3HFJ 4.8 ?
32 PsiBlast_CBE 75.7537%-151 - C3 -3MMX - NADD_BACAC -
22 PsiBlast_CBE 75.6337%-143 - C3 -3DV2 - ? -
35 PsiBlast_CBE 75.4837%-146 - C3 -3MLA 4.5 NADD_BACAC
34 PsiBlast_CBE 75.4037%-144 - C3 -3MLB 5.1 NADD_BACAC
29 PsiBlast_CBE 75.3037%-152 - C3 -3MMX - NADD_BACAC -
33 PsiBlast_CBE 75.2637%-149 - C3 -3MMX - NADD_BACAC -
24 PsiBlast_CBE 75.2237%-148 - C3 -3DV2 - ? -
41 PsiBlast_CBE 74.7437%-139 - C3 -2QTM 2.7 ?
7 PsiBlast_PDB 74.7437%-149 - C3 -3MMX - NADD_BACAC -
40 PsiBlast_CBE 73.8837%-136 - C3 -2QTN 4.3 ?
9 PsiBlast_PDB 73.6837%-138 - C3 -2QTN 2.3 ?
26 PsiBlast_CBE 73.6137%-139 - C3 -2QTR 7.2 NADD_BACAC
25 PsiBlast_CBE 73.4537%-139 - C3 -2QTR 7.9 NADD_BACAC
37 PsiBlast_CBE 72.5937%-133 - C3 -3E27 7.4 ?
3 PsiBlast_PDB 72.1937%-140 - C3 -2QTR 6.0 NADD_BACAC
79 HHSearch 72.0538%-136 - C3 -2QTR 6.0 NADD_BACAC
38 PsiBlast_CBE 71.7037%-133 - C3 -3E27 7.2 ?
10 PsiBlast_PDB 71.6137%-132 - C3 -3E27 5.2 ?
39 PsiBlast_CBE 70.9837%-134 - C3 -3E27 8.0 ?
43 PsiBlast_CBE 68.6933%-130 - C3 -1KAQ 8.7 NADD_BACSU
45 PsiBlast_CBE 67.1033%-126 - C3 -1KAQ 9.4 NADD_BACSU
46 PsiBlast_CBE 66.6233%-125 - C3 -1KAQ 8.6 NADD_BACSU
44 PsiBlast_CBE 66.0433%-126 - C3 -1KAQ 7.2 NADD_BACSU
42 PsiBlast_CBE 65.8033%-145 - C3 -1KAQ 6.9 NADD_BACSU