@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2395: (2016-04-03 )
MKTFGKKVVLIGDGSVGSSYAFAMVTQGVADEFVIIDIAKDKVKADVQDLNHGTVHSPSPVDVKAGEYEDCKDADLVVITAGAPQKPGETRLQLVEKNTKIMKSIVKSVMDSGFDGYFLIAANPVDILTRFVKEYTGLPAERVIGSGTVLDSARLQYLISQELGVAPSSVDASIIGEHGDTELAVWSQANVAGISVYDTLKEQTGSEAKAEEIYVNTRDAAYEIIQAKGSTYYGIALALMRISKAILNNENNVLNVSIQLDGQYGGHKGVYLGVPTLVNQHGAVKIYEMPLSAEEQALFDKSVKILEDTFDSIKYLLED

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_A_3(3H3J)
LDH1_STAAC
[Raw transfer]




NAD_B_6(3H3J)
LDH1_STAAC
[Raw transfer]




ENA_A_2(2X0J)
MDH_ARCFU
[Raw transfer]




NAD_F_6(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_O_15(2LDB)
LDH_GEOSE
[Raw transfer]




NAD_R_21(1LTH)
LDH2_BIFL2
[Raw transfer]




NAD_R_18(2LDB)
LDH_GEOSE
[Raw transfer]




NAD_Q_17(2LDB)
LDH_GEOSE
[Raw transfer]




NAD_P_16(2LDB)
LDH_GEOSE
[Raw transfer]




NAD_G_7(1EZ4)
LDH_LACPE
[Raw transfer]




NAD_T_17(1LTH)
LDH2_BIFL2
[Raw transfer]




NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]




NAP_C_3(1HYE)
MDH_METJA
[Raw transfer]




NAD_B_8(3WSW)
?
[Raw transfer]




NAD_D_13(3WSW)
?
[Raw transfer]




NAD_B_7(1LLD)
LDH2_BIFL2
[Raw transfer]




NAD_B_5(3D4P)
LDH1_STAAC
[Raw transfer]




NAD_A_3(3D4P)
LDH1_STAAC
[Raw transfer]




NAD_D_6(3PQF)
LDH_BACSU
[Raw transfer]




NAD_C_5(3PQF)
LDH_BACSU
[Raw transfer]




NAD_A_5(3WSW)
?
[Raw transfer]




NAD_A_5(3WSW)
?
[Raw transfer]




NAD_C_11(3WSW)
?
[Raw transfer]




NAD_A_5(1LLD)
LDH2_BIFL2
[Raw transfer]




NAD_A_5(1LLD)
LDH2_BIFL2
[Raw transfer]




EDO_A_4(3TL2)
MDH_BACAN
[Raw transfer]




MPD_A_6(4M1Q)
?
[Raw transfer]




1 PsiBlast_PDB 96.2859%-110 - C5 -3D0O - LDH1_STAAC -
3 PsiBlast_PDB 95.6159%-108 - C5 -3H3J 8.2 LDH1_STAAC
22 PsiBlast_CBE 95.4659%-109 - C5 -3H3J 8.8 LDH1_STAAC
2 PsiBlast_PDB 94.8759%-113 - C5 -3D4P 6.3 LDH1_STAAC
116 HHSearch 94.3257%-107 - C5 -3D0O - LDH1_STAAC -
21 PsiBlast_CBE 94.1259%-111 - C5 -3D4P 8.0 LDH1_STAAC
25 PsiBlast_CBE 93.4555%-110 - C5 -3PQD - LDH_BACSU -
7 PsiBlast_PDB 93.4555%-108 - C5 -4LMR - LDH1_BACCR -
4 PsiBlast_PDB 93.2555%-108 - C5 -3PQD - LDH_BACSU -
8 PsiBlast_PDB 93.2055%-114 - C5 -4LN1 - LDH1_BACCR -
39 PsiBlast_CBE 93.1355%-107 - C5 -1LDN - LDH_GEOSE -
31 PsiBlast_CBE 92.4855%-109 - C5 -3PQF 7.9 LDH_BACSU
5 PsiBlast_PDB 92.4655%-109 - C5 -3PQE - LDH_BACSU -
107 HHSearch 92.4254%-107 - C5 -3PQE - LDH_BACSU -
6 PsiBlast_PDB 92.1255%-109 - C5 -3PQF - LDH_BACSU -
41 PsiBlast_CBE 91.9755%-108 - C5 -1LDN - LDH_GEOSE -
26 PsiBlast_CBE 91.8155%-107 - C5 -3PQD - LDH_BACSU -
30 PsiBlast_CBE 91.3955%-110 - C5 -3PQF 7.0 LDH_BACSU
37 PsiBlast_CBE 91.2555%-104 - C5 -1LDN - LDH_GEOSE -
51 PsiBlast_CBE 90.6253%-111 - C5 -2ZQZ - LDH_LACCA -
43 PsiBlast_CBE 88.4053%-107 - C5 -1EZ4 8.3 LDH_LACPE
45 PsiBlast_CBE 87.4253%-107 - C5 -1EZ4 8.6 LDH_LACPE
19 PsiBlast_PDB 87.2450%-110 - C5 -4M1Q 3.7 ?
70 PsiBlast_CBE 86.1945%-110 - C5 -3WSW 7.6 ?
72 PsiBlast_CBE 85.3045%-106 - C5 -3WSW 8.2 ?
44 PsiBlast_CBE 85.2153%-111 - C5 -1EZ4 8.9 LDH_LACPE
71 PsiBlast_CBE 84.8745%-104 - C5 -3WSW 6.1 ?
12 PsiBlast_PDB 84.8253%-112 - C5 -1EZ4 9.0 LDH_LACPE
69 PsiBlast_CBE 83.6045%-104 - C5 -3WSW 6.1 ?
117 HHSearch 83.5744%-105 - C5 -3WSW 8.3 ?
112 HHSearch 83.5051%-106 - C5 -1EZ4 8.8 LDH_LACPE
34 PsiBlast_CBE 83.1555%-109 - C5 -2LDB 7.6 LDH_GEOSE
33 PsiBlast_CBE 83.0455%-109 - C5 -2LDB 7.4 LDH_GEOSE
10 PsiBlast_PDB 82.4455%-109 - C5 -2LDB 7.8 LDH_GEOSE
32 PsiBlast_CBE 82.3455%-109 - C5 -2LDB 7.4 LDH_GEOSE
109 HHSearch 76.3539%-103 - C5 -1LLD 8.5 LDH2_BIFL2
78 PsiBlast_CBE 76.2840% -95 - C5 -1LTH 8.8 LDH2_BIFL2
80 PsiBlast_CBE 75.4940%-103 - C5 -1LLD 8.6 LDH2_BIFL2
79 PsiBlast_CBE 75.0640%-100 - C5 -1LLD 8.1 LDH2_BIFL2
105 HHSearch 75.0333% -95 - C5 -3TL2 3.2 MDH_BACAN
77 PsiBlast_CBE 73.4840%-100 - C5 -1LTH 9.3 LDH2_BIFL2
106 HHSearch 65.3833% -91 - C5 -2X0J 9.9 MDH_ARCFU