@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0410: (2015-12-15 )
MQFHSSSALITPFKKDLSVDEAAYETLIKRQIFQGMDACVPVGTTGESATLTHKEHMRCIEIAIETCKSTKTPSNSRMKVLAGVGSNATSESLSLAKFAQKIGADAILCVSPYYNRPTQQGLFEHYKTIAQSVEIPVMLYDVPSRTGVSIEVPTALKLFREVPNIKAIKEASGSLKRVTELHYYEKDFKIFSGEDSLNHSIMFSGGCGVISVTGNLMPNLISQMVNCALKFEYQQALEIQNKLFDLHQALFVETNPIPIKMAMHLAGLIENPSYRLPLVAPSKETIKLLEKTLQQYEVIA

Atome Classification :

(55 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGO_B_9(3NOE)
DAPA_PSEAE
[Raw transfer]




GOL_A_3(3TAK)
?
[Raw transfer]




GOL_C_14(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_8(4ICN)
?
[Raw transfer]




GOL_A_9(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_10(3PUL)
?
[Raw transfer]




GOL_B_4(3DI0)
DAPA_STAAC
[Raw transfer]




GOL_A_3(3DI0)
DAPA_STAAC
[Raw transfer]




GOL_A_11(3FLU)
DAPA_NEIMB
[Raw transfer]




GOL_B_11(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_A_9(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_A_8(3I7R)
DAPA_ECOLI
[Raw transfer]




GOL_D_17(3DAQ)
DAPA_STAAR
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_9(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_B_11(3I7S)
DAPA_ECOLI
[Raw transfer]




LYS_B_7(1YXD)
DAPA_ECOLI
[Raw transfer]




LYS_B_7(1YXD)
DAPA_ECOLI
[Raw transfer]




GOL_B_8(3PUD)
?
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




LYZ_A_3(3TCE)
?
[Raw transfer]




GOL_B_13(3I7R)
DAPA_ECOLI
[Raw transfer]




DLY_A_7(2ATS)
DAPA_ECOLI
[Raw transfer]




GOL_A_7(3I7S)
DAPA_ECOLI
[Raw transfer]




GOL_B_8(3I7Q)
DAPA_ECOLI
[Raw transfer]




GOL_A_7(3VFL)
?
[Raw transfer]




LYS_A_4(4PFM)
?
[Raw transfer]




EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




EDO_A_6(3SI9)
DAPA_BARHE
[Raw transfer]




GOL_B_10(3G0S)
DAPA_SALTY
[Raw transfer]




GOL_B_22(3FLU)
DAPA_NEIMB
[Raw transfer]




LYZ_B_4(3TCE)
?
[Raw transfer]




3OH_B_4(3S8H)
DAPA_PSEAE
[Raw transfer]




LYS_B_5(3PUE)
?
[Raw transfer]




LYS_A_3(3PUO)
DAPA_PSEAE
[Raw transfer]




3OH_A_3(3S8H)
DAPA_PSEAE
[Raw transfer]




PYR_A_3(3DI1)
DAPA_STAAC
[Raw transfer]




LYS_B_7(4PFM)
?
[Raw transfer]




PYR_B_4(3DI1)
DAPA_STAAC
[Raw transfer]




LYS_B_6(3PUO)
DAPA_PSEAE
[Raw transfer]




LYS_B_6(3PUL)
?
[Raw transfer]




LYS_B_6(3PUO)
DAPA_PSEAE
[Raw transfer]




LYZ_B_4(3TCE)
?
[Raw transfer]




1 PsiBlast_PDB 96.9755%-106 - C5 -3M5V - DAPA_CAMJE -
33 PsiBlast_CBE 91.6041%-107 - C5 -3PUD 2.2 ?
111 HHSearch 91.3042%-101 - C5 -3TAK 2.1 ?
3 PsiBlast_PDB 91.0243%-103 - C5 -2YXG - DAPA_METJA -
7 PsiBlast_PDB 90.8741%-110 - C5 -3RK8 - ? -
13 PsiBlast_PDB 90.8641%-106 - C5 -4DXV - ? -
127 HHSearch 90.5845% -99 - C5 -2YXG - DAPA_METJA -
10 PsiBlast_PDB 90.5541%-106 - C5 -3TDF - ? -
8 PsiBlast_PDB 90.5241%-105 - C5 -3TAK - ? -
25 PsiBlast_CBE 90.0641%-108 - C5 -3UQN - ? -
9 PsiBlast_PDB 90.0441%-107 - C5 -3TCE 2.4 ?
36 PsiBlast_CBE 90.0340%-105 - C5 -3QZE - DAPA_PSEAE -
15 PsiBlast_PDB 90.0040%-107 - C5 -3QZE - DAPA_PSEAE -
23 PsiBlast_CBE 89.9543%-109 - C5 -2EHH - DAPA_AQUAE -
11 PsiBlast_PDB 89.7541%-107 - C5 -3U8G - ? -
116 HHSearch 89.7039% -97 - C5 -3FLU 2.1 DAPA_NEIMB
30 PsiBlast_CBE 89.6641%-107 - C5 -3RK8 - ? -
122 HHSearch 89.6341% -99 - C5 -3SI9 2.2 DAPA_BARHE
35 PsiBlast_CBE 89.5840%-107 - C5 -3QZE - DAPA_PSEAE -
29 PsiBlast_CBE 89.5241%-107 - C5 -3TAK - ? -
32 PsiBlast_CBE 89.1041%-108 - C5 -3PUE 2.2 ?
28 PsiBlast_CBE 89.1041%-106 - C5 -3TCE 2.5 ?
31 PsiBlast_CBE 88.4641%-108 - C5 -3PUL 2.7 ?
51 PsiBlast_CBE 88.2240% -97 - C5 -3PUO 2.6 DAPA_PSEAE
48 PsiBlast_CBE 88.0839%-105 - C5 -3G0S 2.1 DAPA_SALTY
47 PsiBlast_CBE 88.0739%-105 - C5 -3G0S 2.4 DAPA_SALTY
69 PsiBlast_CBE 87.5841%-102 - C5 -3SI9 2.2 DAPA_BARHE
50 PsiBlast_CBE 86.9240% -95 - C5 -3S8H 2.4 DAPA_PSEAE
52 PsiBlast_CBE 86.8940% -97 - C5 -3PUO 3.1 DAPA_PSEAE
57 PsiBlast_CBE 86.3540%-103 - C5 -4PFM 2.6 ?
61 PsiBlast_CBE 86.2139%-104 - C5 -1YXD 3.6 DAPA_ECOLI
49 PsiBlast_CBE 86.0940% -93 - C5 -3S8H 3.6 DAPA_PSEAE
17 PsiBlast_PDB 86.0940%-103 - C5 -4PFM 3.4 ?
58 PsiBlast_CBE 85.7239%-106 - C5 -2ATS 4.2 DAPA_ECOLI
71 PsiBlast_CBE 85.5238%-105 - C5 -3I7S 2.8 DAPA_ECOLI
37 PsiBlast_CBE 85.4741%-102 - C5 -4ICN 3.3 ?
94 PsiBlast_CBE 85.3533%-102 - C5 -3DI0 2.9 DAPA_STAAC
75 PsiBlast_CBE 85.1538%-104 - C5 -3I7Q 2.7 DAPA_ECOLI
73 PsiBlast_CBE 85.1338%-102 - C5 -3I7R 2.4 DAPA_ECOLI
56 PsiBlast_CBE 85.1240% -94 - C5 -3NOE Error DAPA_PSEAE
99 PsiBlast_CBE 85.0532%-102 - C5 -3DAQ 3.0 DAPA_STAAR
60 PsiBlast_CBE 85.0039%-104 - C5 -1YXD 3.4 DAPA_ECOLI
95 PsiBlast_CBE 84.9333%-103 - C5 -3DI0 3.5 DAPA_STAAC
97 PsiBlast_CBE 84.7832%-102 - C5 -3DAQ 3.0 DAPA_STAAR
59 PsiBlast_CBE 84.7839%-104 - C5 -2ATS 3.4 DAPA_ECOLI
96 PsiBlast_CBE 84.7732%-102 - C5 -3DAQ 2.4 DAPA_STAAR
93 PsiBlast_CBE 84.6933%-101 - C5 -3DI1 3.3 DAPA_STAAC
85 PsiBlast_CBE 84.3540%-103 - C5 -3FLU 2.3 DAPA_NEIMB
74 PsiBlast_CBE 84.2538%-105 - C5 -3I7Q 3.3 DAPA_ECOLI
70 PsiBlast_CBE 84.1138%-101 - C5 -3I7S 2.3 DAPA_ECOLI
98 PsiBlast_CBE 83.4732%-102 - C5 -3DAQ 2.8 DAPA_STAAR
72 PsiBlast_CBE 83.0038%-101 - C5 -3I7R 3.2 DAPA_ECOLI
132 HHSearch 82.9533% -93 - C5 -3DAQ 3.0 DAPA_STAAR
92 PsiBlast_CBE 81.7833% -99 - C5 -3DI1 3.1 DAPA_STAAC
91 PsiBlast_CBE 72.6131% -72 - C5 -3VFL 2.8 ?