@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0778: (2015-12-18 )
MPNHQNMLDNQTILITGGTGSFGKRFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHAAALKHVPIAEYNPLECIKTNIMGASNVINACLKNEISQVIALSTDKAANPINLYGATKLCSDKLFVSANNFKGPSQTQFGVVRYGNVVGSRGSVVPFFKKLVQNKASEIPITDIRMTRFWITLDEGVSFVLKSLKRMHGGEIFVPKIPSMKMIDLAKALAPNIPTKIIGIRPGEKLHEVMIPKDESHLALEFEDFFIIQPTISFQTPKDYTLTKLHEKGQKVAPDFEYSSHTNNQWLEPDDLLKLL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_16(2GNA)
PSEB_HELPY
[Raw transfer]



NDP_B_5(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NAP_B_13(2GN8)
PSEB_HELPY
[Raw transfer]



NAP_B_13(2GN9)
PSEB_HELPY
[Raw transfer]



NAP_A_7(2GN6)
PSEB_HELPY
[Raw transfer]



NAP_B_13(2GN6)
PSEB_HELPY
[Raw transfer]



NAP_A_13(2GNA)
PSEB_HELPY
[Raw transfer]



NAP_A_7(2GN8)
PSEB_HELPY
[Raw transfer]



NAP_A_7(2GN9)
PSEB_HELPY
[Raw transfer]



NAP_A_2(4G5H)
?
[Raw transfer]



NDP_A_2(4TQG)
?
[Raw transfer]



GDU_A_7(2GNA)
PSEB_HELPY
[Raw transfer]



UDZ_B_20(3W1V)
?
[Raw transfer]



GDU_B_10(2GNA)
PSEB_HELPY
[Raw transfer]
27 Fugue 92.8497% -99 - C1 -2GN4 13.2 PSEB_HELPY
1 PsiBlast_PDB 92.8497% -99 - C1 -2GN4 13.2 PSEB_HELPY
21 PsiBlast_CBE 92.4497% -99 - C1 -2GNA 12.3 PSEB_HELPY
25 PsiBlast_CBE 91.6197% -96 - C1 -2GN4 12.9 PSEB_HELPY
2 PsiBlast_PDB 90.9497% -99 - C1 -2GN6 11.2 PSEB_HELPY
24 PsiBlast_CBE 90.1697% -96 - C1 -2GN6 12.5 PSEB_HELPY
5 PsiBlast_PDB 89.7497% -99 - C1 -2GNA 11.6 PSEB_HELPY
3 PsiBlast_PDB 89.5597% -98 - C1 -2GN8 12.6 PSEB_HELPY
22 PsiBlast_CBE 89.5497% -99 - C1 -2GN9 11.6 PSEB_HELPY
23 PsiBlast_CBE 89.2597% -96 - C1 -2GN8 12.2 PSEB_HELPY
4 PsiBlast_PDB 88.9697% -98 - C1 -2GN9 12.1 PSEB_HELPY
36 HHSearch 77.9489% -88 - C1 -2GN4 13.1 PSEB_HELPY
8 PsiBlast_PDB 72.6437%-100 - C1 -4J2O - ? -
26 PsiBlast_CBE 68.8240% -94 - C1 -3W1V 7.0 ?
6 PsiBlast_PDB 67.6740% -91 - C1 -3W1V - ? -
7 PsiBlast_PDB 65.7740% -89 - C1 -4G5H 11.9 ?
28 Fugue 61.6835% -92 - C1 -4TQG 11.9 ?
9 PsiBlast_PDB 50.3635% -94 - C1 -4TQG - ? -
44 HHSearch 44.3723%-103 - C1 -3PVZ - ? -
40 HHSearch 43.3219% -84 - C1 -2BLL - ARNA_ECOLI -