@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0183: (2016-03-12 )
MDASTSFAILPSNVKQKTAFERKVNQVKAASWTNNCLTGTLDIGQFSCYFVNEKIARVTVNPFGEVDLTPSIAAIHDNEKQAAKFTETNDCYELHFADKEVIVCKNPFQIIMKQAGKRIFQTEGLAINRDKEHQISIQSEPGTAIFGLGEKTGALNKAGSIISMWNTDVYSPHNKDTVELYQSIPFMIADTAKTTYGLFYDNSHRTEFDFQSFEEMYTVLAEGGQANLYIIFGEDVKEVVANYTDLTGKTPLPPKWSLGYHQSRYSYTSEEEVERIANTFKEKEIPLDCVFMDIHYMDDFRVFTFNPDTFPNGPELIARLREQNIDVVPIVDPGIKKDVDYSVYQEGIKNNYFCTKLEGSIYYGDVWPGVSAFPDFLSTTVQHWWGSLHKFYTDLGIRGIWNDMNEPSVFNESKTMDLDVVHNLDGKNVTHKEAHNLYGLYMSKATFEGLKRLVPNERPFSLTRAGYAGVQRYSAVWTGDNRSHWEHLEMSLPMIMNLGLSGVAFTGADVGGFSSDCTKEMLIRWTQAGAFLPYFRNHCVQDSIYQEPWAFGADAEKIVKQYIELRYAFLPYIYTEFQKTAESGLPLVRPLYMEFKDERDLIQVNDQFMLGENILVAPIVREGQAKRLVRLPKGLWFNYWTKEQFVGGDYIIADAPIDTMPIYIKAGTILPVGSSVQNTKETQELTLEVYLDSETATGYVYNDDGKSYQYESGAVSKTTLTATFKNGEVLINATHQGEANLQQKVTTIQVFGEKIDKITRAGI

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACR_A_2(3W37)
?
[Raw transfer]




SUGAR_A_2(3WEM)
?
[Raw transfer]

-

SUGAR_A_2(3WEN)
?
[Raw transfer]

-

ACR_A_2(2QMJ)
MGA_HUMAN
[Raw transfer]




SUGAR_A_2(3WEL)
?
[Raw transfer]

-

KTL_A_2(3L4V)
MGA_HUMAN
[Raw transfer]




NR4_A_2(3L4Y)
MGA_HUMAN
[Raw transfer]




NR3_A_2(3L4X)
MGA_HUMAN
[Raw transfer]




DSK_A_2(3L4U)
MGA_HUMAN
[Raw transfer]




MIG_A_2(3L4W)
MGA_HUMAN
[Raw transfer]




GOL_A_7(3L4Y)
MGA_HUMAN
[Raw transfer]




56 Fugue 94.6025% -71 - C3 -4BA0 - OL4AG_CELJU -
36 HHSearch 91.9227% -64 * C3 *3LPP - SUIS_HUMAN -
40 HHSearch 90.7634% -79 - C3 -3NSX - ? -
37 HHSearch 90.3627% -63 - C3 -3TOP - MGA_HUMAN -
59 Fugue 89.7625% -64 - C3 -2QMJ 5.8 MGA_HUMAN
35 HHSearch 89.4727% -63 - C3 -3L4Y - MGA_HUMAN -
31 PsiBlast_CBE 89.4533% -73 - C3 -2G3N - AGLU_SULSO -
32 PsiBlast_CBE 89.4433% -73 - C3 -2G3N - AGLU_SULSO -
28 PsiBlast_CBE 89.2433% -73 - C3 -2G3N - AGLU_SULSO -
29 PsiBlast_CBE 89.2033% -73 - C3 -2G3N - AGLU_SULSO -
8 PsiBlast_PDB 89.1533% -73 - C3 -2G3N - AGLU_SULSO -
39 HHSearch 88.9335% -76 - C3 -2G3M - AGLU_SULSO -
33 HHSearch 88.8326% -69 - C3 -2XVL - ? -
30 PsiBlast_CBE 88.6833% -73 - C3 -2G3N - AGLU_SULSO -
7 PsiBlast_PDB 88.6333% -73 - C3 -2G3M - AGLU_SULSO -
26 PsiBlast_CBE 88.6232% -77 - C3 -3NSX - ? -
2 PsiBlast_PDB 88.4232% -76 - C3 -3PHA - ? -
22 PsiBlast_CBE 88.3732% -77 - C3 -3PHA - ? -
1 PsiBlast_PDB 88.3432% -78 - C3 -3NUK - ? -
17 PsiBlast_PDB 88.1729% -67 - C3 -3L4V 5.0 MGA_HUMAN
13 PsiBlast_PDB 85.8834% -62 - C3 -3WEM 1.2 ?
12 PsiBlast_PDB 85.8434% -61 - C3 -3WEL 0.6 ?
10 PsiBlast_PDB 85.7234% -62 - C3 -3W37 0.7 ?
14 PsiBlast_PDB 85.6234% -61 - C3 -3WEN 0.8 ?