@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0188: (2016-03-13 )
MSKDIATPGRTTEILKKYGFLFKKSLGQNFLIDSNILTRITDTAEITKETNVIEIGPGIGALTEQLAKTANEVVAFEIDQRLLPILDDTLSAYNNVKVVHGDVLKADVEEVIAEQFAKPELPLKIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVADRISAVPSTKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAEVNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDELVEGLNAIGIDLIRRGETLDIPEFAKLSNFLGDFLKEK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SAM_D_4(1ZQ9)
DIM1_HUMAN
[Raw transfer]




MTA_C_6(3FUX)
RSMA_THET8
[Raw transfer]




MTA_B_5(3FUX)
RSMA_THET8
[Raw transfer]




SAM_C_3(1ZQ9)
DIM1_HUMAN
[Raw transfer]




SAM_C_3(1ZQ9)
DIM1_HUMAN
[Raw transfer]




MEQ_A_5(1NV8)
PRMC_THEMA
[Raw transfer]




AMP_A_2(3GRU)
RSMA_METJA
[Raw transfer]




GOL_A_10(2IH2)
MTTA_THEAQ
[Raw transfer]




48 HHSearch 89.2636%-109 * C2 *3GRU 5.3 RSMA_METJA
22 PsiBlast_CBE 88.8337%-111 - C2 -3FUX 6.2 RSMA_THET8
3 PsiBlast_PDB 88.2337%-111 - C2 -3FUX - RSMA_THET8 -
1 PsiBlast_PDB 88.0637%-111 - C2 -3FUU - RSMA_THET8 -
2 PsiBlast_PDB 88.0337%-111 - C2 -3FUW - RSMA_THET8 -
21 PsiBlast_CBE 87.2737%-110 - C2 -3FUX 6.0 RSMA_THET8
54 HHSearch 83.7530%-107 - C2 -1ZQ9 4.1 DIM1_HUMAN
10 PsiBlast_PDB 80.8436%-116 - C2 -3FYD - RSMA_METJA -
53 HHSearch 80.8032%-115 - C2 -1QYR - RSMA_ECOLI -
7 PsiBlast_PDB 80.6537%-113 - C2 -3GRV - RSMA_METJA -
6 PsiBlast_PDB 80.3737%-114 - C2 -3GRU - RSMA_METJA -
11 PsiBlast_PDB 80.1736%-117 - C2 -3FYC - RSMA_METJA -
23 PsiBlast_CBE 80.0232%-122 - C2 -3TPZ - RSMA_ECOLI -
24 PsiBlast_CBE 79.9336%-118 - C2 -3FYC - RSMA_METJA -
5 PsiBlast_PDB 79.4437%-112 - C2 -3GRR - RSMA_METJA -
8 PsiBlast_PDB 79.2837%-118 - C2 -3GRY - RSMA_METJA -
50 HHSearch 79.2527%-106 - C2 -2H1R - ? -
12 PsiBlast_PDB 77.8731%-120 - C2 -1QYR - RSMA_ECOLI -
13 PsiBlast_PDB 77.7031%-120 - C2 -4ADV - RSMA_ECOLI -
19 PsiBlast_PDB 77.5527%-112 - C2 -2H1R - ? -
20 PsiBlast_PDB 74.4032%-125 - C2 -1ZQ9 4.1 DIM1_HUMAN
25 PsiBlast_CBE 73.4732%-121 - C2 -1ZQ9 7.4 DIM1_HUMAN