@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1021: (2016-03-20 )
MSFSKLMMAVCSGLLLVATAIGTVGYYFFSEGSWYKILIEQKIFYIPFVVFVPLTAISIGLIIGGLIGYFVKQKFESIDFSIRLLGQGDLEKKITSEEDENFLEVQQVYKQIDRLRDKMKAQTILTQKLASDRAESTGQTKEAILSEERHRIARELHDSVSQQLFAAMMLLSALNEQSEKSATPAMQKQLKMVESIVNESQSEMRALLLHLRPTQLEGKSLKTGIEQLLKELTTKLPIEVEWQIEDISLQKGIEDHLFRIVQELLSNTLRHSKAKLLEVRLVTMDNLAVMKVVDDGVGFDMDNVRQGSYGLQNMRERVAEFGGTIKIISFPGRGTSVEIKIPLVAKKDVESE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_2(4GT8)

[Raw transfer]
1 PsiBlast_PDB 93.9547%-109 - C2 -4GT8 6.2
2 PsiBlast_PDB 83.4829% -68 - C2 -3GIG - DESK_BACSU -
4 PsiBlast_PDB 81.9629% -72 - C2 -3GIF - DESK_BACSU -
6 PsiBlast_PDB 81.7728% -59 - C2 -3EHJ - DESK_BACSU -
3 PsiBlast_PDB 81.6829% -65 - C2 -3EHF - DESK_BACSU -
5 PsiBlast_PDB 80.3428% -57 - C2 -3EHH - DESK_BACSU -
17 PsiBlast_PDB 69.1922% -37 - C2 -4Q20 - DIVL_CAUCR -
7 PsiBlast_PDB 69.1930% -76 - C2 -3EHG - -
51 Fugue 68.9012% -51 - C2 -1GKZ - BCKD_RAT -
35 HHSearch 68.5828% -76 - C2 -1I58 - CHEA_THEMA -
42 Fugue 67.5825% -78 - C2 -3EHG - -
43 Fugue 61.9517% -71 - C2 -1ID0 - -
44 Fugue 61.8625% -71 - C2 -3ZXQ - DOST_MYCTU -
46 Fugue 61.8117% -73 - C2 -1L0O - SP2AB_GEOSE -
30 HHSearch 61.4227% -61 - C2 -1B3Q - CHEA_THEMA -
28 HHSearch 60.6428% -67 - C2 -3EHG - -
21 HHSearch 59.3528% -77 - C2 -3EHH - DESK_BACSU -
50 Fugue 59.1511% -42 - C2 -1JM6 - PDK2_RAT -
10 PsiBlast_PDB 59.0224% -76 - C2 -4U7O - ? -
14 PsiBlast_PDB 58.7922% -54 - C2 -3SL2 - -