@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1764: (2016-03-28 )
MNLLVVGSGGREHAISKKLLASNNVEKVFCAPGNDGMRLDDIQLVAISETDKAGLIDFAKKAEIAFVIVGPEVPLLEGVVDALEEAGIKAFGPKANAALIEGSKDFAKQFMEKYAIPTAASRTFTDYAEAKAYLNERGVPIVIKADGLAAGKGVTVALEMEEAVLALKDMMLEEKFGDASLKVVIEDFLAGEEFSLMAFVNGEEVYPMSIAQDHKRAYEGDKGPNTGGMGAYSPVPHISEAVIEEAVQKILLPTAKGMVKEGRYFRGILYAGLILTADGPKVIEFNARFGDPETQVVLPRLESDFAALIDALLHNEKPDVRFKKTGLTLGVVLASAGYPEHYEKGNKLTGLNDIAEDVAIYHAGTKQDENGDFISDGGRVLLLAKEAETMSDARTLLYPEMQKLDNPNFFYRIDIGTKAE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_5(2YW2)
PUR2_AQUAE
[Raw transfer]



ATP_B_6(2YW2)
PUR2_AQUAE
[Raw transfer]



ATP_A_5(2YW2)
PUR2_AQUAE
[Raw transfer]



ANP_A_2(2XCL)
PUR2_BACSU
[Raw transfer]



ATP_A_8(2QK4)
PUR2_HUMAN
[Raw transfer]



ATP_A_8(2QK4)
PUR2_HUMAN
[Raw transfer]



AMP_A_4(2YRX)
?
[Raw transfer]



GLY_A_2(2YS6)
?
[Raw transfer]
5 PsiBlast_PDB 92.9055%-102 - C1 -2YS6 2.3 ?
2 PsiBlast_PDB 92.5157% -93 - C1 -2XCL - PUR2_BACSU -
1 PsiBlast_PDB 92.2858% -88 - C1 -2XD4 - PUR2_BACSU -
3 PsiBlast_PDB 92.0755%-103 - C1 -2YRW - ? -
4 PsiBlast_PDB 91.9755%-101 - C1 -2YRX - ? -
29 HHSearch 86.9454% -92 - C1 -2YRX 3.6 ?
25 HHSearch 86.8657% -82 - C1 -2XCL 5.3 PUR2_BACSU
21 PsiBlast_CBE 86.6147% -92 - C1 -2YW2 6.0 PUR2_AQUAE
9 PsiBlast_PDB 86.4047% -92 - C1 -2YW2 6.4 PUR2_AQUAE
11 PsiBlast_PDB 86.1245% -90 - C1 -2QK4 5.6 PUR2_HUMAN
8 PsiBlast_PDB 85.5245% -89 - C1 -3MJF - PUR2_YERPE -
10 PsiBlast_PDB 85.3447% -90 - C1 -2YYA - PUR2_AQUAE -
13 PsiBlast_PDB 84.2143% -91 - C1 -2IP4 - ? -
27 HHSearch 82.8145% -88 - C1 -3MJF - PUR2_YERPE -
26 HHSearch 81.9745% -86 - C1 -2YW2 6.4 PUR2_AQUAE
31 HHSearch 81.8344% -80 - C1 -2QK4 5.6 PUR2_HUMAN
12 PsiBlast_PDB 80.6841% -89 - C1 -3LP8 - ? -
30 HHSearch 79.6141% -86 * C1 *3LP8 - ? -
28 HHSearch 77.9844% -79 - C1 -2IP4 - ? -
14 PsiBlast_PDB 69.0435% -78 - C1 -1VKZ - PUR2_THEMA -