@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2101: (2016-03-31 )
MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPMKGIEMSRLNPEDRMQDRSF

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

R5P_A_8(4ADU)
PDX1_PLABE
[Raw transfer]




R5P_B_9(4ADU)
PDX1_PLABE
[Raw transfer]




GOL_C_6(4JDY)
PDXS_MYCTU
[Raw transfer]




GOL_A_4(4JDY)
PDXS_MYCTU
[Raw transfer]




MPD_B_8(2ZBT)
PDXS_THET8
[Raw transfer]




MPD_C_5(2ZBT)
PDXS_THET8
[Raw transfer]




GOL_B_5(4JDY)
PDXS_MYCTU
[Raw transfer]




MPD_D_6(2ZBT)
PDXS_THET8
[Raw transfer]




MPD_A_7(2ZBT)
PDXS_THET8
[Raw transfer]




MPD_A_7(2ZBT)
PDXS_THET8
[Raw transfer]




26 PsiBlast_CBE 91.3682%-109 - C4 -2NV2 - PDXS_BACSU -
1 PsiBlast_PDB 91.3382%-116 - C4 -2NV1 - PDXS_BACSU -
152 HHSearch 91.0580%-119 - C4 -2NV1 - PDXS_BACSU -
5 PsiBlast_PDB 90.8577%-101 - C4 -4WXY - PDXS_GEOKA -
2 PsiBlast_PDB 90.7482%-113 - C4 -2NV2 - PDXS_BACSU -
36 PsiBlast_CBE 90.6882%-109 - C4 -2NV2 - PDXS_BACSU -
31 PsiBlast_CBE 90.2182%-108 - C4 -2NV2 - PDXS_BACSU -
24 PsiBlast_CBE 89.7882%-121 - C4 -2NV1 - PDXS_BACSU -
23 PsiBlast_CBE 89.6882%-120 - C4 -2NV1 - PDXS_BACSU -
25 PsiBlast_CBE 89.3982%-117 - C4 -2NV1 - PDXS_BACSU -
45 PsiBlast_CBE 89.3377%-121 - C4 -4WY0 - PDXS_GEOKA -
22 PsiBlast_CBE 89.2682%-115 - C4 -2NV1 - PDXS_BACSU -
47 PsiBlast_CBE 88.8877%-122 - C4 -4WY0 - PDXS_GEOKA -
51 PsiBlast_CBE 88.7177%-121 - C4 -4WY0 - PDXS_GEOKA -
44 PsiBlast_CBE 88.5877%-124 - C4 -4WY0 - PDXS_GEOKA -
58 PsiBlast_CBE 88.0759%-112 - C4 -2YZR - PDXS_METJA -
37 PsiBlast_CBE 88.0478%-119 - C4 -4WY0 - PDXS_GEOKA -
48 PsiBlast_CBE 88.0377%-115 - C4 -4WY0 - PDXS_GEOKA -
6 PsiBlast_PDB 87.9177%-129 - C4 -4WXZ - PDXS_GEOKA -
52 PsiBlast_CBE 87.7577%-119 - C4 -4WY0 - PDXS_GEOKA -
57 PsiBlast_CBE 86.5065%-108 - C4 -2ZBT 2.7 PDXS_THET8
55 PsiBlast_CBE 86.4665%-107 - C4 -2ZBT 2.8 PDXS_THET8
8 PsiBlast_PDB 86.2465%-108 - C4 -2ZBT 2.8 PDXS_THET8
56 PsiBlast_CBE 85.6265%-109 - C4 -2ZBT 2.6 PDXS_THET8
12 PsiBlast_PDB 84.5365%-107 - C4 -4JDY 2.7 PDXS_MYCTU
66 PsiBlast_CBE 83.8665%-108 - C4 -4JDY 2.8 PDXS_MYCTU
65 PsiBlast_CBE 83.4265%-107 - C4 -4JDY 2.8 PDXS_MYCTU
18 PsiBlast_PDB 81.4456%-113 - C4 -4ADU 3.5 PDX1_PLABE
71 PsiBlast_CBE 81.2556%-110 - C4 -4ADU 4.3 PDX1_PLABE
154 HHSearch 79.6263% -93 - C4 -2ZBT 2.8 PDXS_THET8