@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2133: (2016-04-01 )
MLVNMKQLLEVAKENKFAVGAFNVADSNFLRVVVEEAEKNNAPAIIAVHPTELDFTKDDFFQYVLARIKNSPVPFVLHLDHGDNMGDVMRAVRCGFSSVMIDGSLLPFEENIRVTKEVVDVCHKLGVSVEGELGTIGKTGNSIEGGVSEIIYTKPEEAEEYISRTGVDTLAVAIGTAHGIYPKDKEPKLRLDILKEIKALVNIPLVLHGGSANPDAEIAAAVEIGIQKVNISSDYKYAFYKKCREILSTTELWDANAIYPDCIDAAKEVVKYKMGLFESIGQVEKYQQAKTTAWRSELI

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_A_4(2ISW)
?
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_B_12(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



13P_A_8(3Q94)
?
[Raw transfer]



13P_A_5(2FJK)
ALF_THECA
[Raw transfer]



PGH_A_9(3C52)
ALF_HELPY
[Raw transfer]



PGH_A_4(2ISW)
?
[Raw transfer]



PGH_A_5(2ISV)
?
[Raw transfer]



PGH_B_6(2ISV)
?
[Raw transfer]



FLC_A_4(4TO8)
?
[Raw transfer]



FLC_B_6(4TO8)
?
[Raw transfer]
25 PsiBlast_CBE 96.5237%-100 - C4 -1RV8 - ? -
26 PsiBlast_CBE 96.2537%-105 - C4 -1RV8 - ? -
23 PsiBlast_CBE 96.0137%-104 - C4 -1RVG - ? -
22 PsiBlast_CBE 95.8337%-104 - C4 -1RVG - ? -
24 PsiBlast_CBE 95.6637%-103 - C4 -1RV8 - ? -
1 PsiBlast_PDB 95.3237%-101 - C4 -1RV8 - ? -
50 HHSearch 94.9539% -94 - C4 -1RVG - ? -
2 PsiBlast_PDB 94.6137% -97 - C4 -1RVG - ? -
21 PsiBlast_CBE 94.5437% -99 - C4 -1RVG - ? -
12 PsiBlast_PDB 93.0234% -97 - C4 -3C56 - ALF_HELPY -
33 PsiBlast_CBE 92.0334% -95 - C4 -3N9R - ? -
10 PsiBlast_PDB 91.6434%-103 - C4 -3C4U - ALF_HELPY -
32 PsiBlast_CBE 91.6234% -98 - C4 -3N9R - ? -
38 PsiBlast_CBE 91.0934%-102 - C4 -3C4U - ALF_HELPY -
37 PsiBlast_CBE 91.0834% -98 - C4 -3C56 - ALF_HELPY -
13 PsiBlast_PDB 90.7134% -95 - C4 -3N9R - ? -
5 PsiBlast_PDB 90.6635% -97 - C4 -2FJK 4.0 ALF_THECA
36 PsiBlast_CBE 90.5534% -93 - C4 -3N9R - ? -
34 PsiBlast_CBE 90.4534% -94 - C4 -3N9R - ? -
35 PsiBlast_CBE 90.2234% -92 - C4 -3N9R - ? -
49 HHSearch 90.0835% -98 - C4 -2ISW 4.1 ?
11 PsiBlast_PDB 89.2834% -92 - C4 -3C52 4.1 ALF_HELPY
30 PsiBlast_CBE 89.2534%-102 - C4 -2ISV 3.5 ?
8 PsiBlast_PDB 88.8034%-105 - C4 -2ISV 2.8 ?
51 HHSearch 88.6036%-105 * C4 *1GVF 3.8 KBAY_ECOLI
9 PsiBlast_PDB 88.5034%-103 - C4 -2ISW 3.2 ?
4 PsiBlast_PDB 87.5135%-100 - C4 -1GVF 3.6 KBAY_ECOLI
40 Fugue 87.0638% -98 - C4 -1GVF 3.8 KBAY_ECOLI
28 PsiBlast_CBE 87.0335% -95 - C4 -1GVF 3.9 KBAY_ECOLI
27 PsiBlast_CBE 86.6337%-101 - C4 -4TO8 4.1 ?
3 PsiBlast_PDB 86.0337%-100 - C4 -4TO8 3.8 ?
6 PsiBlast_PDB 85.7736% -86 - C4 -3Q94 4.5 ?