@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2370: (2016-04-03 )
LSQFDEVIPRIGTNSEKWDGAEELFGRKDIIPMWVADMDFRAPKPVLDAFQRQIDHGIFGYSTKSKALVEAVIDWNKEQHQFEIDPSTLFFNGAVVPTISLAIRSLTNEGDAVLMVSPIYPPFFNVTKATERKVVMSPLIYENRQYRMDFNDLEKRMKEENVKLFLLCNPQNPGGRCFTKEELVELAKLCEKYQIPIVSDEIHADLVMKNHKHVPMMVAAPFYQDQIITLMAATKTFNLAAIKASYYIITNKDYQTRFAAEQKYATTNGLNVFGIVGTEAAYRHGAPWLKELKEYIYSNYEYVKAELEKEVPEVGVTDLEATYLMWLDCRALPKDEKTIYTDLIEAGVGVQMGSGFGHSGKGFVRFNIACPKETLEKSVKLLIQGLKK

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_A_3(3L8A)
?
[Raw transfer]



PLP_A_3(3L8A)
?
[Raw transfer]



PLP_A_3(4DGT)
?
[Raw transfer]



PLP_A_3(4DQ6)
?
[Raw transfer]



PLP_B_6(4DQ6)
?
[Raw transfer]



PLP_B_10(4DGT)
?
[Raw transfer]



PLP_A_3(1D2F)
MALY_ECOLI
[Raw transfer]



PLP_B_4(1D2F)
MALY_ECOLI
[Raw transfer]



PLP_A_3(1D2F)
MALY_ECOLI
[Raw transfer]



PEG_B_13(3DZZ)
?
[Raw transfer]



PEG_B_13(3DZZ)
?
[Raw transfer]



GOL_A_6(2O0R)
DAPC_MYCTU
[Raw transfer]



EDO_A_14(3FDB)
?
[Raw transfer]
1 PsiBlast_PDB 95.9637%-107 - C1 -4DGT 3.7 ?
21 PsiBlast_CBE 95.9037%-107 - C1 -4DQ6 3.7 ?
25 PsiBlast_CBE 95.1237%-105 - C1 -3B1E - ? -
31 PsiBlast_CBE 95.0437%-106 - C1 -3B1C - ? -
2 PsiBlast_PDB 94.9937%-105 - C1 -4DQ6 3.6 ?
30 PsiBlast_CBE 94.9237%-105 - C1 -3B1C - ? -
28 PsiBlast_CBE 94.9137%-106 - C1 -3B1D - ? -
29 PsiBlast_CBE 94.7237%-104 - C1 -3B1C - ? -
27 PsiBlast_CBE 94.4837%-105 - C1 -3B1D - ? -
22 PsiBlast_CBE 94.4337%-106 - C1 -4DGT 3.5 ?
4 PsiBlast_PDB 94.3437%-103 - C1 -3B1D - ? -
23 PsiBlast_CBE 94.1337%-103 - C1 -3B1E - ? -
66 HHSearch 94.0337%-100 - C1 -3B1D - ? -
24 PsiBlast_CBE 93.9837%-104 - C1 -3B1E - ? -
26 PsiBlast_CBE 93.8937%-104 - C1 -3B1D - ? -
3 PsiBlast_PDB 93.7737%-103 * C1 *3B1C - ? -
5 PsiBlast_PDB 93.3537%-103 - C1 -3B1E - ? -
44 PsiBlast_CBE 93.2932% -99 - C1 -1C7N - ? -
43 PsiBlast_CBE 92.8332%-101 - C1 -1C7N - ? -
45 PsiBlast_CBE 92.6932%-101 - C1 -1C7N - ? -
71 HHSearch 92.3835%-100 - C1 -3DZZ 2.2 ?
69 HHSearch 91.2336%-100 - C1 -3L8A 4.4 ?
9 PsiBlast_PDB 91.1634%-103 - C1 -3DZZ 2.2 ?
7 PsiBlast_PDB 91.0336%-105 - C1 -3L8A 4.4 ?
33 PsiBlast_CBE 88.6632%-117 - C1 -1D2F 3.7 MALY_ECOLI
8 PsiBlast_PDB 88.2732%-115 - C1 -1D2F 3.5 MALY_ECOLI
67 HHSearch 87.6132%-114 - C1 -1D2F 3.5 MALY_ECOLI