@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2458: (2016-04-03 )
MAKKVVTDLDLKDKKVLVRVDFNVPMKDGKITNDNRIVAALPTIEYILEQNGKAILFSHLGKVKTEEDKEGKSLRPVAVRLSELLGKEVKFVPTTRGPELEKAIDELKDGEVLLFENTRFEDIDGKKESKNDPELGKYWASLGDVFVNDAFGTAHRAHASNVGIASNLESAAGFLMEKEIKFIGGVVDNPARPLVAILGGAKVSDKIGVIENLLTKADKVLVGGGMTFTFMAAQGQEIGKSLLEADKVELAKGLLEKAGDKLVLPVDAVVSKEFSNDAPFHTVSADSIPADEMGLDIGQATIDLFTKELQGAKTVVWNGPMGVFELSNFAKGTIGVCEAIANLTDATTIIGGGDSAAAAMDLGFADKFTHISTGGGASLEYLEGKELPGVASISDK

Atome Classification :

(52 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_5(2WZD)
PGK1_HUMAN
[Raw transfer]




ADP_A_3(2X15)
PGK1_HUMAN
[Raw transfer]




ADP_A_4(4AXX)
PGK1_HUMAN
[Raw transfer]




ANP_A_3(1VPE)
PGKT_THEMA
[Raw transfer]




ANP_A_3(1VPE)
PGKT_THEMA
[Raw transfer]




ADP_A_5(2WZC)
PGK1_HUMAN
[Raw transfer]




ADP_A_4(2X13)
PGK1_HUMAN
[Raw transfer]




ADP_A_3(2XE7)
PGK1_HUMAN
[Raw transfer]




ADP_A_4(2WZB)
PGK1_HUMAN
[Raw transfer]




ATP_A_3(1VJD)
PGK1_PIG
[Raw transfer]




ADP_A_4(2WZB)
PGK1_HUMAN
[Raw transfer]




ATP_A_3(2PAA)
PGK2_MOUSE
[Raw transfer]




ADP_A_3(1PHP)
PGK_GEOSE
[Raw transfer]




ADP_A_3(1PHP)
PGK_GEOSE
[Raw transfer]




ACP_A_4(2X14)
PGK1_HUMAN
[Raw transfer]




ADP_A_6(3ZOZ)
PGK1_HUMAN
[Raw transfer]




ATP_A_3(1VJC)
PGK1_PIG
[Raw transfer]




MAP_A_2(1QPG)
PGK_YEAST
[Raw transfer]




ADP_C_9(4NG4)
PGK_COXBU
[Raw transfer]




MAP_A_2(1QPG)
PGK_YEAST
[Raw transfer]




ADP_B_7(4NG4)
PGK_COXBU
[Raw transfer]




LA8_D_8(2Y3I)
PGK1_HUMAN
[Raw transfer]




LA8_A_5(2Y3I)
PGK1_HUMAN
[Raw transfer]




LA8_A_4(2YBE)
PGK1_HUMAN
[Raw transfer]




ACP_A_4(1KF0)
PGK1_PIG
[Raw transfer]




ACP_A_3(2XE8)
PGK1_HUMAN
[Raw transfer]




ADP_A_2(2ZGV)
PGK1_HUMAN
[Raw transfer]




AMP_A_2(1HDI)
PGK1_PIG
[Raw transfer]




ADP_A_2(4FEY)
PGK_FRATT
[Raw transfer]




ADP_B_6(3C3A)
PGK1_HUMAN
[Raw transfer]




CDP_A_5(3C3C)
PGK1_HUMAN
[Raw transfer]




FMT_A_5(3Q3V)
PGK_CAMJE
[Raw transfer]




CDF_B_5(3C3B)
PGK1_HUMAN
[Raw transfer]




3PG_A_4(1VPE)
PGKT_THEMA
[Raw transfer]




3PG_A_2(2P9T)
PGK2_MOUSE
[Raw transfer]




3PG_A_3(3C39)
PGK1_HUMAN
[Raw transfer]




3PG_A_2(2XE6)
PGK1_HUMAN
[Raw transfer]




3PG_B_4(3C39)
PGK1_HUMAN
[Raw transfer]




3PG_B_6(3C3C)
PGK1_HUMAN
[Raw transfer]




3PG_A_4(3C3A)
PGK1_HUMAN
[Raw transfer]




TZN_A_2(4O33)
PGK1_HUMAN
[Raw transfer]




TZN_A_2(4O3F)
PGK1_MOUSE
[Raw transfer]




3PG_A_5(2CUN)
PGK_PYRHO
[Raw transfer]




3PG_B_6(2CUN)
PGK_PYRHO
[Raw transfer]




3PG_A_5(2CUN)
PGK_PYRHO
[Raw transfer]




3PG_B_4(2PAA)
PGK2_MOUSE
[Raw transfer]




3PG_A_3(1QPG)
PGK_YEAST
[Raw transfer]




ATP_A_3(3PGK)
PGK_YEAST
[Raw transfer]




1 PsiBlast_PDB 97.0373% -93 - C11 -4DG5 - PGK_STAAR -
2 PsiBlast_PDB 92.4361% -88 - C11 -1VPE 8.2 PGKT_THEMA
70 HHSearch 92.1762% -88 - C11 -1VPE 8.2 PGKT_THEMA
66 HHSearch 90.5455% -90 - C11 -1PHP 7.7 PGK_GEOSE
3 PsiBlast_PDB 90.3854% -87 - C11 -1PHP 7.7 PGK_GEOSE
41 PsiBlast_CBE 87.8544% -90 - C11 -2P9T 4.0 PGK2_MOUSE
21 PsiBlast_CBE 87.4349% -87 - C11 -1V6S - PGK_THET8 -
4 PsiBlast_PDB 87.4249% -88 - C11 -1V6S - PGK_THET8 -
40 PsiBlast_CBE 87.2244% -92 - C11 -2PAA 5.8 PGK2_MOUSE
69 HHSearch 87.0749% -88 - C11 -1V6S - PGK_THET8 -
68 HHSearch 87.0548% -87 * C11 *3Q3V 3.1 PGK_CAMJE
46 PsiBlast_CBE 86.7645% -96 - C11 -3OZ7 - PGK_PLAF7 -
7 PsiBlast_PDB 86.7449% -90 - C11 -1QPG 8.4 PGK_YEAST
5 PsiBlast_PDB 86.6549% -89 - C11 -2IE8 - ? -
13 PsiBlast_PDB 86.5745% -92 - C11 -2X15 7.8 PGK1_HUMAN
16 PsiBlast_PDB 86.4945% -89 - C11 -2XE6 4.6 PGK1_HUMAN
19 PsiBlast_PDB 86.3545% -89 - C11 -2YBE 8.0 PGK1_HUMAN
35 PsiBlast_CBE 86.3345% -90 - C11 -2ZGV 5.4 PGK1_HUMAN
37 PsiBlast_CBE 86.3044% -87 - C11 -4O33 6.4 PGK1_HUMAN
34 PsiBlast_CBE 86.2045% -92 - C11 -3C39 4.2 PGK1_HUMAN
15 PsiBlast_PDB 86.0245% -90 - C11 -1VJD 5.9 PGK1_PIG
43 PsiBlast_CBE 85.9744% -86 - C11 -4O3F 6.8 PGK1_MOUSE
29 PsiBlast_CBE 85.8445% -93 - C11 -3C3B 4.0 PGK1_HUMAN
32 PsiBlast_CBE 85.8145% -89 - C11 -3C3A 3.6 PGK1_HUMAN
48 PsiBlast_CBE 85.7444% -88 - C11 -1HDI 5.7 PGK1_PIG
18 PsiBlast_PDB 85.6345% -88 - C11 -2XE8 4.4 PGK1_HUMAN
20 PsiBlast_PDB 85.4745% -91 - C11 -3ZOZ 7.8 PGK1_HUMAN
36 PsiBlast_CBE 85.4344% -89 - C11 -1KF0 5.4 PGK1_PIG
10 PsiBlast_PDB 85.3945% -93 - C11 -2WZB 8.4 PGK1_HUMAN
14 PsiBlast_PDB 85.2945% -87 - C11 -1VJC 5.9 PGK1_PIG
11 PsiBlast_PDB 85.1445% -91 - C11 -2WZC 8.1 PGK1_HUMAN
39 PsiBlast_CBE 85.1144% -91 - C11 -2PAA 3.7 PGK2_MOUSE
12 PsiBlast_PDB 85.0245% -90 - C11 -2X13 7.3 PGK1_HUMAN
42 PsiBlast_CBE 84.9044% -91 - C11 -2WZD 7.0 PGK1_HUMAN
31 PsiBlast_CBE 84.8245% -92 - C11 -3C3A 5.4 PGK1_HUMAN
65 HHSearch 84.6746% -87 - C11 -2WZB 8.4 PGK1_HUMAN
33 PsiBlast_CBE 84.6745% -92 - C11 -3C39 4.3 PGK1_HUMAN
17 PsiBlast_PDB 84.6745% -83 - C11 -2XE7 6.3 PGK1_HUMAN
28 PsiBlast_CBE 84.6345% -85 - C11 -3C3C 4.3 PGK1_HUMAN
25 PsiBlast_CBE 84.6345% -83 - C11 -2Y3I 6.8 PGK1_HUMAN
27 PsiBlast_CBE 84.5645% -89 - C11 -3C3C 4.0 PGK1_HUMAN
9 PsiBlast_PDB 84.5445% -82 - C11 -2Y3I 6.7 PGK1_HUMAN
73 HHSearch 84.5350% -87 - C11 -1QPG 8.4 PGK_YEAST
38 PsiBlast_CBE 84.3044% -90 - C11 -2X14 8.3 PGK1_HUMAN
26 PsiBlast_CBE 84.2545% -90 - C11 -4AXX 7.8 PGK1_HUMAN
44 PsiBlast_CBE 84.0647% -84 - C11 -4FEY 5.8 PGK_FRATT
50 PsiBlast_CBE 82.5442% -87 - C11 -4NG4 6.5 PGK_COXBU
49 PsiBlast_CBE 82.5042% -89 - C11 -4NG4 6.6 PGK_COXBU
72 HHSearch 79.5238% -75 - C11 -2CUN 2.5 PGK_PYRHO
53 PsiBlast_CBE 78.2237% -78 - C11 -2CUN 2.5 PGK_PYRHO
52 PsiBlast_CBE 77.4837% -76 - C11 -2CUN 2.8 PGK_PYRHO
8 PsiBlast_PDB 47.4448% 21 - C11 -3PGK 3.0 PGK_YEAST