@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2840: (2016-04-07 )
VEMDPNTDLSSVTRPRATPVLTTFQFDSGKVGHIWTTFSEDQIDLNFACPEVLYKMIDVLMFYLEEGAEYVRLDAVGFMWKVPGTSSIHLEETHEIVKLFRDLVDIAAPGTIIITETNVPHVDNISYFGNGEKEAHMVYQFPLPPLVLHAIHHGNAKFLRNWAKNLELPEGKRTFFNFLASHDGIGLNPVRGIIPEAEILALVNDLEEEGALVSYKQNPDGSKSPYEINVTYMDALSKQADTDDLRLARFLVAHAVLMSIPGVPAVYVQSILGSRNDYLGVEATSHNRSINRKKYDLAEITAELEQRGSLRKATYDALTKLISTRKAESLFHPEIPMEVLESTAELFVVKRSSDAESIILIHNLSEKEVSYSLDSGVYTNLYKGSTVTGSDSIKLSGYEFCWLKTKNYREEQK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

OTU_A_3(3UEQ)
AMYS_NEIPO
[Raw transfer]



SUC_B_2(1JGI)
AMYS_NEIPO
[Raw transfer]



GLC_A_2(1JG9)
AMYS_NEIPO
[Raw transfer]



SUC_A_4(1ZS2)
AMYS_NEIPO
[Raw transfer]



BGC_A_8(3WY2)
?
[Raw transfer]



BGC_A_2(1S46)
AMYS_NEIPO
[Raw transfer]



GOL_A_18(4FLR)
AMYS_NEIPO
[Raw transfer]



GLC_A_2(3CZG)
?
[Raw transfer]



GOL_A_9(4FLR)
AMYS_NEIPO
[Raw transfer]



TRS_E_5(1MW3)
AMYS_NEIPO
[Raw transfer]



TRS_C_3(1MW1)
AMYS_NEIPO
[Raw transfer]
24 HHSearch 85.0722% -94 - C2 -1G5A - AMYS_NEIPO -
20 PsiBlast_PDB 84.2523% -87 - C2 -4FLO - AMYS_NEIPO -
25 HHSearch 84.1524% -90 - C2 -3CZG 3.2 ?
4 PsiBlast_PDB 84.0223% -82 - C2 -4TVU - ? -
14 PsiBlast_PDB 83.6623% -87 - C2 -1MW0 - AMYS_NEIPO -
12 PsiBlast_PDB 83.4123% -87 - C2 -1MW3 2.4 AMYS_NEIPO
19 PsiBlast_PDB 83.1123% -86 - C2 -4FLQ - AMYS_NEIPO -
13 PsiBlast_PDB 83.0923% -88 - C2 -1MVY - AMYS_NEIPO -
10 PsiBlast_PDB 82.9023% -86 - C2 -1MW1 2.6 AMYS_NEIPO
9 PsiBlast_PDB 82.8423% -87 - C2 -1JG9 2.6 AMYS_NEIPO
7 PsiBlast_PDB 82.7723% -85 - C2 -3UEQ 3.1 AMYS_NEIPO
11 PsiBlast_PDB 82.6023% -87 - C2 -1MW2 - AMYS_NEIPO -
8 PsiBlast_PDB 82.5823% -87 - C2 -1G5A - AMYS_NEIPO -
15 PsiBlast_PDB 82.5623% -87 - C2 -1S46 3.7 AMYS_NEIPO
16 PsiBlast_PDB 82.0623% -86 - C2 -1ZS2 3.8 AMYS_NEIPO
18 PsiBlast_PDB 81.0323% -89 * C2 *4FLR 3.3 AMYS_NEIPO
17 PsiBlast_PDB 81.0023% -88 - C2 -1JGI 3.2 AMYS_NEIPO
32 HHSearch 79.6221% -88 - C2 -3WY2 4.4 ?
47 Fugue 78.7920% -68 - C2 -1G5A - AMYS_NEIPO -
35 HHSearch 75.9718% -98 - C2 -1JI1 - NEPU1_THEVU -