@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0947: (2015-12-04 )
MTATKQHKKVILVGDGAVGSSYAFALVNQGIAQELGIIEIPALFDKAVGDAEDLSHALAFTSPKKIYAATYADCADADLVVITAGAPQKPGETRLDLVGKNLAINKSIVTQVVESGFNGIFLVAANPVDVLTYSTWKFSGFPKERVIGSGTSLDSARFRQALADKIGVDARSVHAYIMGEHGDSEFAVWSHANVAGVQLEQWLQENRDIDEQGLVDLFISVRDAAYSIINKKGATYYGIAVALARITKAILDDENAVLPLSVYQEGQYGDVKDVFIGQPAIVGAHGIVRPVNIPLNDAELQKMQASAEQLKDIIDEAWKNPEFQEASKN

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_G_7(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_F_6(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_H_8(1EZ4)
LDH_LACPE
[Raw transfer]



ENA_A_2(2X0J)
MDH_ARCFU
[Raw transfer]



NAD_O_15(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_Q_17(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_P_16(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_R_18(2LDB)
LDH_GEOSE
[Raw transfer]



NAD_E_5(1EZ4)
LDH_LACPE
[Raw transfer]



NAD_A_3(3H3J)
LDH1_STAAC
[Raw transfer]



NAD_B_6(3H3J)
LDH1_STAAC
[Raw transfer]



NAD_B_8(3WSW)
?
[Raw transfer]



NAD_D_6(3PQF)
LDH_BACSU
[Raw transfer]



NAD_A_5(3WSW)
?
[Raw transfer]



OXM_H_8(1I0Z)
LDHB_HUMAN
[Raw transfer]



NAD_C_5(3PQF)
LDH_BACSU
[Raw transfer]



NAD_A_3(3D4P)
LDH1_STAAC
[Raw transfer]



NAD_D_13(3WSW)
?
[Raw transfer]



NAD_C_11(3WSW)
?
[Raw transfer]



NAD_A_5(3WSW)
?
[Raw transfer]



NAD_B_5(3D4P)
LDH1_STAAC
[Raw transfer]



NAD_A_5(1LLD)
LDH2_BIFL2
[Raw transfer]



OXM_F_6(1I0Z)
LDHB_HUMAN
[Raw transfer]
25 PsiBlast_CBE 97.6268%-115 - C7 -3VKV - LDH_LACCA -
32 PsiBlast_CBE 97.1668%-115 - C7 -2ZQY - LDH_LACCA -
26 PsiBlast_CBE 96.7968%-115 - C7 -2ZQZ - LDH_LACCA -
1 PsiBlast_PDB 96.7468%-120 - C7 -2ZQY - LDH_LACCA -
21 PsiBlast_CBE 96.7368%-117 - C7 -3VKV - LDH_LACCA -
31 PsiBlast_CBE 96.6768%-116 - C7 -2ZQY - LDH_LACCA -
30 PsiBlast_CBE 96.6768%-113 - C7 -2ZQZ - LDH_LACCA -
28 PsiBlast_CBE 96.6368%-114 - C7 -2ZQZ - LDH_LACCA -
2 PsiBlast_PDB 96.6268%-117 - C7 -2ZQZ - LDH_LACCA -
23 PsiBlast_CBE 96.5368%-116 - C7 -3VKV - LDH_LACCA -
33 PsiBlast_CBE 96.3068%-117 - C7 -2ZQY - LDH_LACCA -
27 PsiBlast_CBE 96.2668%-113 - C7 -2ZQZ - LDH_LACCA -
34 PsiBlast_CBE 96.1167%-117 - C7 -3VPF - LDH_LACCA -
40 PsiBlast_CBE 96.0767%-116 - C7 -3VKU - LDH_LACCA -
36 PsiBlast_CBE 96.0767%-112 - C7 -3VPF - LDH_LACCA -
39 PsiBlast_CBE 96.0667%-115 - C7 -3VKU - LDH_LACCA -
41 PsiBlast_CBE 96.0267%-118 - C7 -3VKU - LDH_LACCA -
22 PsiBlast_CBE 95.8468%-113 - C7 -3VKV - LDH_LACCA -
35 PsiBlast_CBE 95.8267%-116 - C7 -3VPF - LDH_LACCA -
37 PsiBlast_CBE 95.6867%-110 - C7 -3VPF - LDH_LACCA -
46 PsiBlast_CBE 92.7760%-107 - C7 -1EZ4 9.1 LDH_LACPE
44 PsiBlast_CBE 92.2660%-106 - C7 -1EZ4 8.8 LDH_LACPE
122 HHSearch 91.8861%-118 - C7 -1EZ4 8.8 LDH_LACPE
45 PsiBlast_CBE 91.0560%-111 - C7 -1EZ4 8.6 LDH_LACPE
7 PsiBlast_PDB 91.0360%-113 - C7 -1EZ4 9.1 LDH_LACPE
56 PsiBlast_CBE 89.7554%-111 - C7 -3PQF 6.9 LDH_BACSU
57 PsiBlast_CBE 89.1154%-110 - C7 -3PQF 5.7 LDH_BACSU
9 PsiBlast_PDB 88.7558%-105 - C7 -3H3J 8.1 LDH1_STAAC
55 PsiBlast_CBE 88.0458%-108 - C7 -3D4P 7.6 LDH1_STAAC
54 PsiBlast_CBE 87.9358%-106 - C7 -3H3J 8.3 LDH1_STAAC
71 PsiBlast_CBE 87.7147%-110 - C7 -3WSW 5.3 ?
70 PsiBlast_CBE 87.4847%-111 - C7 -3WSW 5.4 ?
11 PsiBlast_PDB 87.1958%-109 - C7 -3D4P 7.1 LDH1_STAAC
127 HHSearch 86.9747%-107 - C7 -3WSW 5.2 ?
72 PsiBlast_CBE 86.9547%-107 - C7 -3WSW 5.0 ?
69 PsiBlast_CBE 85.9047%-108 - C7 -3WSW 5.4 ?
120 HHSearch 84.0438%-112 - C7 -1LLD 8.1 LDH2_BIFL2
66 PsiBlast_CBE 83.8254%-111 - C7 -2LDB 7.3 LDH_GEOSE
67 PsiBlast_CBE 83.7954%-111 - C7 -2LDB 7.3 LDH_GEOSE
65 PsiBlast_CBE 83.7454%-111 - C7 -2LDB 7.2 LDH_GEOSE
19 PsiBlast_PDB 83.7154%-111 - C7 -2LDB 7.1 LDH_GEOSE
77 PsiBlast_CBE 80.5939% -95 - C7 -1I0Z 2.8 LDHB_HUMAN
78 PsiBlast_CBE 79.5139% -92 - C7 -1I0Z 3.4 LDHB_HUMAN
115 HHSearch 74.0539% -92 - C7 -2X0J 8.1 MDH_ARCFU