@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1554: (2015-12-08 )
MPELPEVETVRKGLERLVVNQEIASITIKVPKMVKTDLNDFMISLPGKTIQQVLRRGKYLLFDFGEMVMVSHLRMEGKYLLFPNKVPDNKHFHLYFKLTNGSTLVYQDVRKFGTFELVRKSSLKDYFTQKKLGPEPTADTFQFEPFSKGLANSKKPIKPLLLDQRLVAGLGNIYVDEVLWAAKIHPQRLANQLTESETSLLHKEIIRILTLGIEKGGSTIRTYKNALGEDGTMQKYLQVYGKTGQPCPRCGCLIKKIKVGGRGTHYCPRCQCL

Atome Classification :

(66 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_B_2(3GQ4)
?
[Raw transfer]
-
NACID_B_2(3SBJ)
?
[Raw transfer]
-
TRS_B_2(1TDH)
NEIL1_HUMAN
[Raw transfer]



NACID_B_2(3GPP)
?
[Raw transfer]
-
NACID_B_1(2F5O)
?
[Raw transfer]
-
NACID_C_3(2XZF)
FPG_LACLC
[Raw transfer]
-
GOL_A_6(1PJI)
FPG_LACLC
[Raw transfer]



GOL_A_2(3TWL)
FPG_ARATH
[Raw transfer]



NACID_B_2(3GQ5)
?
[Raw transfer]
-
GOL_D_8(3SAR)
?
[Raw transfer]



NACID_B_2(3SAW)
?
[Raw transfer]
-
CHAIN_D_4(4CIS)
?
[Raw transfer]
-
NACID_B_2(3GQ3)
?
[Raw transfer]
-
NACID_C_2(1XC8)
FPG_LACLC
[Raw transfer]
-
NACID_E_2(1PJI)
FPG_LACLC
[Raw transfer]
-
NACID_C_2(1TDZ)
FPG_LACLC
[Raw transfer]
-
NACID_E_2(1PJJ)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(2XZU)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(4PD2)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(4PDI)
FPG_LACLC
[Raw transfer]
-
NACID_E_2(1NNJ)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(4PCZ)
FPG_LACLC
[Raw transfer]
-
NACID_C_3(4PDG)
FPG_LACLC
[Raw transfer]
-
NACID_E_2(1KFV)
FPG_LACLC
[Raw transfer]
-
NACID_D_1(1PJJ)
FPG_LACLC
[Raw transfer]
-
NACID_B_1(1L2D)
?
[Raw transfer]
-
NACID_B_2(3U6Q)
?
[Raw transfer]
-
NACID_B_2(3U6S)
?
[Raw transfer]
-
NACID_C_2(3SAR)
?
[Raw transfer]
-
NACID_D_1(1PM5)
FPG_LACLC
[Raw transfer]
-
NACID_C_1(3C58)
FPG_LACLC
[Raw transfer]
-
NACID_B_2(3JR5)
?
[Raw transfer]
-
NACID_B_2(4G4R)
?
[Raw transfer]
-
NACID_E_2(1PM5)
FPG_LACLC
[Raw transfer]
-
NACID_C_2(3SAV)
?
[Raw transfer]
-
NACID_B_2(3GPY)
?
[Raw transfer]
-
NACID_B_2(3U6C)
?
[Raw transfer]
-
NACID_B_2(3U6L)
?
[Raw transfer]
-
NACID_I_2(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_B_1(1L1Z)
?
[Raw transfer]
-
NACID_B_1(1L1T)
?
[Raw transfer]
-
CHAIN_C_3(4CIS)
?
[Raw transfer]
-
NACID_B_1(1R2Z)
?
[Raw transfer]
-
NACID_B_2(3SAT)
?
[Raw transfer]
-
NACID_J_4(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_L_8(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_E_1(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_K_6(1K82)
FPG_ECOLI
[Raw transfer]
-
NACID_B_2(3U6M)
?
[Raw transfer]
-
NACID_C_1(2F5P)
?
[Raw transfer]
-
NACID_B_2(3GO8)
?
[Raw transfer]
-
NACID_C_3(3U6P)
?
[Raw transfer]
-
NACID_C_3(3U6P)
?
[Raw transfer]
-
NACID_B_2(3GP1)
?
[Raw transfer]
-
NACID_B_1(1L2B)
?
[Raw transfer]
-
NACID_B_2(3GPU)
?
[Raw transfer]
-
NACID_B_2(4G4Q)
?
[Raw transfer]
-
NACID_B_1(1L2C)
?
[Raw transfer]
-
NACID_B_1(2F5S)
?
[Raw transfer]
-
NACID_B_2(4G4O)
?
[Raw transfer]
-
NACID_C_3(3U6O)
?
[Raw transfer]
-
NACID_B_1(2F5N)
?
[Raw transfer]
-
NACID_C_3(3U6D)
?
[Raw transfer]
-
NACID_B_2(3GPX)
?
[Raw transfer]
-
NACID_B_1(1R2Y)
?
[Raw transfer]
-
NACID_B_1(2F5Q)
?
[Raw transfer]
-
NACID_B_2(4G4N)
?
[Raw transfer]
-
NACID_C_3(3U6E)
?
[Raw transfer]
-
NACID_B_2(3SAU)
?
[Raw transfer]
-
NACID_B_2(3JR4)
?
[Raw transfer]
-
NACID_B_2(3SAS)
?
[Raw transfer]
-
10 PsiBlast_PDB 88.0957%-103 - C5 -4PDI 5.6 FPG_LACLC
6 PsiBlast_PDB 87.1957% -98 - C5 -3C58 5.5 FPG_LACLC
2 PsiBlast_PDB 87.0357%-102 - C5 -1TDZ 5.8 FPG_LACLC
7 PsiBlast_PDB 86.7557%-102 - C5 -2XZF 4.3 FPG_LACLC
8 PsiBlast_PDB 86.7057% -97 - C5 -2XZU 5.7 FPG_LACLC
12 PsiBlast_PDB 86.5257% -99 - C5 -1PJJ 7.1 FPG_LACLC
4 PsiBlast_PDB 86.5257% -98 - C5 -1PM5 7.5 FPG_LACLC
5 PsiBlast_PDB 86.4457% -97 - C5 -1XC8 5.3 FPG_LACLC
3 PsiBlast_PDB 86.4357%-100 - C5 -1PJI 4.9 FPG_LACLC
13 PsiBlast_PDB 86.4156% -97 - C5 -4PCZ 5.5 FPG_LACLC
11 PsiBlast_PDB 85.9057%-102 - C5 -1NNJ 5.4 FPG_LACLC
9 PsiBlast_PDB 85.8357% -98 - C5 -4PDG 6.8 FPG_LACLC
14 PsiBlast_PDB 85.4556% -97 - C5 -4PD2 5.4 FPG_LACLC
1 PsiBlast_PDB 84.7957%-102 - C5 -4CIS 4.7 ?
15 PsiBlast_PDB 84.7455%-101 - C5 -1KFV 4.9 FPG_LACLC
21 PsiBlast_CBE 84.0657% -97 - C5 -4CIS 5.0 ?
42 PsiBlast_CBE 81.4644% -98 - C5 -3GQ5 6.4 ?
52 PsiBlast_CBE 81.2244% -96 - C5 -3U6D 8.7 ?
46 PsiBlast_CBE 81.1544% -97 - C5 -3U6Q 5.6 ?
24 PsiBlast_CBE 81.0044% -96 - C5 -2F5P 6.6 ?
16 PsiBlast_PDB 81.0045% -90 - C5 -1L1T 3.7 ?
30 PsiBlast_CBE 80.9444% -97 - C5 -3SAU 5.6 ?
51 PsiBlast_CBE 80.8844% -94 - C5 -3U6E 6.6 ?
54 PsiBlast_CBE 80.8743% -97 - C5 -4G4O 6.0 ?
53 PsiBlast_CBE 80.8444% -94 - C5 -3U6C 5.8 ?
47 PsiBlast_CBE 80.8444% -95 - C5 -3U6P 6.9 ?
36 PsiBlast_CBE 80.8044% -97 - C5 -4G4N 6.3 ?
37 PsiBlast_CBE 80.7344% -96 - C5 -3SBJ 4.2 ?
29 PsiBlast_CBE 80.6344% -96 - C5 -3SAV 6.4 ?
67 HHSearch 80.6244% -95 * C5 *3U6P 6.9 ?
31 PsiBlast_CBE 80.6044% -95 - C5 -3SAR 6.5 ?
17 PsiBlast_PDB 80.6045% -90 - C5 -1L1Z 4.4 ?
39 PsiBlast_CBE 80.5944% -98 - C5 -3SAW 6.4 ?
38 PsiBlast_CBE 80.5844% -94 - C5 -3GP1 6.4 ?
48 PsiBlast_CBE 80.5244% -93 - C5 -3U6O 7.3 ?
45 PsiBlast_CBE 80.3844% -95 - C5 -3U6S 5.8 ?
40 PsiBlast_CBE 80.3344% -94 - C5 -3SAT 4.3 ?
20 PsiBlast_PDB 80.3145% -88 - C5 -1L2D 5.4 ?
50 PsiBlast_CBE 80.2544% -93 - C5 -3U6L 7.0 ?
55 PsiBlast_CBE 80.2343% -93 - C5 -4G4R 2.9 ?
49 PsiBlast_CBE 80.2144% -94 - C5 -3U6M 4.8 ?
19 PsiBlast_PDB 80.2145% -89 - C5 -1L2C 5.1 ?
43 PsiBlast_CBE 80.0344% -95 - C5 -3GPP 6.7 ?
18 PsiBlast_PDB 80.0345% -89 - C5 -1L2B 6.1 ?
26 PsiBlast_CBE 79.9244% -93 - C5 -2F5N 5.5 ?
33 PsiBlast_CBE 79.7944% -84 - C5 -3GPY 4.0 ?
25 PsiBlast_CBE 79.7544% -96 - C5 -2F5O 5.1 ?
44 PsiBlast_CBE 79.5944% -94 - C5 -4G4Q 4.2 ?
41 PsiBlast_CBE 79.5144% -95 - C5 -3SAS 4.4 ?
32 PsiBlast_CBE 79.3344% -84 - C5 -3GQ4 4.6 ?
22 PsiBlast_CBE 79.2044% -84 - C5 -1R2Z 4.3 ?
27 PsiBlast_CBE 78.8344% -85 - C5 -2F5S 6.9 ?
23 PsiBlast_CBE 78.8344% -81 - C5 -1R2Y 4.8 ?
34 PsiBlast_CBE 78.7944% -80 - C5 -3JR5 6.0 ?
35 PsiBlast_CBE 78.6844% -90 - C5 -3JR4 4.6 ?
57 PsiBlast_CBE 77.7440% -97 - C5 -3GPX 7.0 ?
28 PsiBlast_CBE 77.6844% -82 - C5 -2F5Q 5.5 ?
64 PsiBlast_CBE 76.9938% -89 - C5 -1K82 4.5 FPG_ECOLI
65 PsiBlast_CBE 76.9738% -89 - C5 -1K82 6.0 FPG_ECOLI
58 PsiBlast_CBE 76.9040% -94 - C5 -3GO8 6.8 ?
59 PsiBlast_CBE 76.7740% -95 - C5 -3GPU 7.2 ?
56 PsiBlast_CBE 76.7740% -98 - C5 -3GQ3 6.2 ?
62 PsiBlast_CBE 76.7638% -88 - C5 -1K82 4.3 FPG_ECOLI
66 HHSearch 76.7438% -89 - C5 -1K82 5.9 FPG_ECOLI
63 PsiBlast_CBE 75.8338% -88 - C5 -1K82 6.4 FPG_ECOLI
69 HHSearch 61.3030% -75 - C5 -3TWL 2.9 FPG_ARATH