@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu32330: (2016-07-23 )
MAKKDEHLRKPEWLKIKLNTNENYTGLKKLMRENNLHTVCEEAKCPNIHECWAVRRTATFMILGSVCTRACRFCAVKTGLPTELDLQEPERVADSVALMNLKHAVITAVARDDQKDGGAGIFAETVRAIRRKSPFTTIEVLPSDMGGNYDNLKTLMDTRPDILNHNIETVRRLTPRVRARATYDRSLEFLRRAKEMQPDIPTKSSIMIGLGETKEEIIEVMDDLLANNVDIMAIGQYLQPTKKHLKVQKYYHPDEFAELKEIAMQKGFSHCEAGPLVRSSYHADEQVNEASKKRQAQA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MTA_B_5(4U0O)
LIPA2_THEEB
[Raw transfer]




DTT_B_4(4U0O)
LIPA2_THEEB
[Raw transfer]




SF4_B_3(4U0O)
LIPA2_THEEB
[Raw transfer]




SF4_B_3(4U0O)
LIPA2_THEEB
[Raw transfer]




SF4_B_3(4U0O)
LIPA2_THEEB
[Raw transfer]




SF4_B_2(4U0O)
LIPA2_THEEB
[Raw transfer]




SAH_B_4(4U0P)
LIPA2_THEEB
[Raw transfer]




30 Fugue 77.9650% -14 - C4 -4U0O 3.7 LIPA2_THEEB
2 PsiBlast_PDB 77.6447% -11 - C4 -4U0P 2.4 LIPA2_THEEB
1 PsiBlast_PDB 77.2647% -14 - C4 -4U0O 6.0 LIPA2_THEEB
9 HHSearch 75.5546% -12 - C4 -4U0O 3.7 LIPA2_THEEB
31 Fugue 38.9415% 24 - C4 -1R30 - BIOB_ECOLI -
5 PsiBlast_PDB 38.7260%-362 * C5 *4L15 - FIGL1_CAEEL -
32 Fugue 36.3514% 35 - C4 -3T7V - PYLB_METBF -
6 PsiBlast_PDB 35.1960%-285 - C5 -4L16 - -
37 Fugue 33.2918% 3 - C4 -4D79 - TCDA_ECOLI -
16 HHSearch 33.2415% 7 - C4 -1OLT - HEMN_ECOLI -
11 HHSearch 33.0417% 16 - C4 -3T7V - PYLB_METBF -
18 HHSearch 31.9212% 35 - C4 -3C8F - PFLA_ECOLI -
19 HHSearch 31.8317% 4 - C4 -4WCX - ? -
15 HHSearch 31.5316% 15 - C4 -1TV8 - MOAA_STAA8 -
35 Fugue 31.5145%-129 - C1 -2LLR - ? -
33 Fugue 31.0415% 71 - C4 -4JC0 - RIMO_THEMA -
17 HHSearch 29.5515% 36 - C4 -4RTB - ? -
14 HHSearch 29.0615% 40 - C4 -1R30 - BIOB_ECOLI -
12 HHSearch 28.5814% 45 - C4 -4JC0 - RIMO_THEMA -
25 HHSearch 28.1712% -23 - C4 -2A5H - KAMA_CLOSU -