@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu36170: (2016-07-31 )
MKVFDVHKFDMKKEQDFLQVQFNLKNRINLSPTIHPDSINTCAGVDLAYWEQDGEPYGVCCIIVIDADTKEVIEKVHSMGRISVPYVSGFLAFRELPLIIEAAKKLETEPDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAKTYLKIKGCDFVTPEIEVGAYTDIIIDGEVYGRALRTRRDVKPIFLSCGNYIDLDSSYQITMSLINQESRLPIPVRLADLETHVLRTFYQKNHV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_G_6(4B20)
NFI_THEMA
[Raw transfer]

-

NACID_C_3(4B20)
NFI_THEMA
[Raw transfer]

-

NACID_C_3(2W35)
NFI_THEMA
[Raw transfer]

-

NACID_C_3(2W36)
NFI_THEMA
[Raw transfer]

-

NACID_F_5(2W35)
NFI_THEMA
[Raw transfer]

-

NACID_E_5(2W36)
NFI_THEMA
[Raw transfer]

-

1 PsiBlast_PDB 93.4997%-136 - C5 -3GA2 - NFI_BACSU -
36 HHSearch 69.6032%-112 - C5 -3GOC - NFI_STRAW -
5 PsiBlast_PDB 69.0833%-124 - C5 -2W36 10.4 NFI_THEMA
22 Fugue 68.8334%-128 - C5 -2W36 - NFI_THEMA -
2 PsiBlast_PDB 68.7834%-121 - C5 -2W35 11.8 NFI_THEMA
20 PsiBlast_CBE 68.4433%-126 - C5 -2W36 10.6 NFI_THEMA
32 HHSearch 68.33100% -48 - C5 -3GA2 - NFI_BACSU -
19 PsiBlast_CBE 68.1734%-122 - C5 -2W35 8.5 NFI_THEMA
6 PsiBlast_PDB 67.8534%-106 - C5 -3GOC - NFI_STRAW -
34 HHSearch 67.6933%-127 - C5 -2W36 - NFI_THEMA -
4 PsiBlast_PDB 67.6434%-128 - C5 -3HD0 - NFI_THEMA -
18 PsiBlast_CBE 67.6034%-124 - C5 -4B20 2.5 NFI_THEMA
3 PsiBlast_PDB 67.0234%-120 - C5 -4B20 10.1 NFI_THEMA
21 PsiBlast_CBE 65.4134%-107 - C5 -3GOC - NFI_STRAW -
33 HHSearch 61.3226%-116 - C5 -4XPU - NFI_ECOLI -
35 HHSearch 56.4629% -31 * C5 *4NSP - ENDOV_HUMAN -
8 PsiBlast_PDB 55.6530% -49 - C5 -4XPU - NFI_ECOLI -
7 PsiBlast_PDB 54.9330% -95 - C5 -4NSP - ENDOV_HUMAN -
43 HHSearch 41.827%-195 - C5 -2F1R - ? -
39 HHSearch 38.1817%-105 - C5 -2NRT - -