@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu38040: (2016-08-03 )
MTAHDQELRRRAYEEVEKKEPIANSDPHRQHFHIMPPVGLLNDPNGVIYWKGSYHVFFQWQPFQTGHGAKFWGHYTTQDVVNWKREEIALAPSDWFDKNGCYSGSAVTKDDRLYLFYTGNVRDQDGNRETYQCLAVSDDGLSFEKKGVVARLPEGYTAHFRDPKVWEHEGTWYMVIGAQTENLKGQAVLFASDNLTEWRFLGPITGAGFNGLDDFGYMWECPDLFSLQGSDVLIVSPQGLEADGFRYQNVYQSGYFVGRLDYNKPELKHGEFTELDQGFDFYAPQTLEDDQGRRILFAWMAVPDQDEGSHPTIDCHWIHCMTLPRQLTLSGQKLIQQPLPELKAMRRNEKKIHINMHGSSGALPVEKPERTEILLEDIHTESGFSISIRGTATFSFHKDEGIVTLERKSFDGKRTEARHCRIKDLHTVHMFLDASSVEIFINNGEEVLSARYFPFPGNHEVTASATGKSEMNVGIWTLM

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUC_A_2(2QQU)
INV1_ARATH
[Raw transfer]




SUC_A_4(2ADD)
?
[Raw transfer]




FRU_A_4(2ADE)
?
[Raw transfer]




FRU_A_3(3PIJ)
?
[Raw transfer]




FRU_A_3(3PIJ)
?
[Raw transfer]




DQR_A_4(2AEZ)
?
[Raw transfer]




FRU_A_3(3KF3)
INV_SCHOC
[Raw transfer]




DQQ_A_4(2AEY)
?
[Raw transfer]




GOL_F_6(1Y4W)
INUE_ASPAW
[Raw transfer]




GOL_D_4(1ST8)
?
[Raw transfer]




GOL_F_6(1ST8)
?
[Raw transfer]




32 HHSearch 89.8530% -7 * C2 *3PIJ 3.2 ?
36 HHSearch 79.9724% -28 - C2 -3UGF - ? -
1 PsiBlast_PDB 79.7929% 26 - C2 -3PIG - ? -
2 PsiBlast_PDB 79.2029% 24 - C2 -3PIJ 3.6 ?
31 HHSearch 77.1224% 2 - C2 -3SC7 - INU2_ASPFI -
33 HHSearch 76.2526% 24 - C2 -1Y4W 2.3 INUE_ASPAW
40 HHSearch 75.6225% -3 - C2 -1ST8 - ? -
37 HHSearch 75.3525% 15 - C2 -2AC1 - INV1_ARATH -
3 PsiBlast_PDB 75.3533% 9 - C2 -1UYP - BFRA_THEMA -
51 Fugue 75.2029% 19 - C2 -1UYP - BFRA_THEMA -
24 PsiBlast_CBE 75.0333% 11 - C2 -1UYP - BFRA_THEMA -
41 HHSearch 74.8422% -4 - C2 -4FFH - ? -
21 PsiBlast_CBE 74.8233% 9 - C2 -1UYP - BFRA_THEMA -
26 PsiBlast_CBE 74.5832% 12 - C2 -1W2T - BFRA_THEMA -
22 PsiBlast_CBE 74.2833% 10 - C2 -1UYP - BFRA_THEMA -
25 PsiBlast_CBE 74.1633% 10 - C2 -1UYP - BFRA_THEMA -
4 PsiBlast_PDB 73.9532% 14 - C2 -1W2T - BFRA_THEMA -
27 PsiBlast_CBE 73.6632% 14 - C2 -1W2T - BFRA_THEMA -
23 PsiBlast_CBE 73.2133% 13 - C2 -1UYP - BFRA_THEMA -
28 PsiBlast_CBE 73.0632% 13 - C2 -1W2T - BFRA_THEMA -
9 PsiBlast_PDB 58.9930% 7 - C2 -2ADD 3.2 ?
14 PsiBlast_PDB 58.6230% 9 - C2 -2AEZ 4.3 ?
8 PsiBlast_PDB 58.0030% 8 - C2 -1ST8 2.7 ?
10 PsiBlast_PDB 57.3330% 9 - C2 -2ADE 3.0 ?
11 PsiBlast_PDB 57.1530% 7 - C2 -2AEY 2.8 ?