@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1712: (2016-05-04 )
MSRLSAAVVAIDGPAGTGKSSVSRRLARELGARFLDTGAMYRIVTLAVLRAGADPSDIAAVETIASTVQMSLGYDPDGDSCYLAGEDVSVEIRGDAVTRAVSAVSSVPAVRTRLVELQRTMAEGPGSIVVEGRDIGTVVFPDAPVKIFLTASAETRARRRNAQNVAAGLADDYDGVLADVRRRDHLDSTRAVSPLQAAGDAVIVDTSDMTEAEVVAHLLELVTRRSEAVR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDP_D_4(2CMK)
KCY_ECOLI
[Raw transfer]




CDP_A_2(3AKD)
KCY_THET8
[Raw transfer]




C_E_5(1KDP)
KCY_ECOLI
[Raw transfer]




C5P_H_8(2H92)
KCY_STAAW
[Raw transfer]




CAR_F_6(1KDR)
KCY_ECOLI
[Raw transfer]




C_H_8(1KDO)
KCY_ECOLI
[Raw transfer]




C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]




C5P_C_9(4DIE)
?
[Raw transfer]




C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]




CAR_G_7(1KDR)
KCY_ECOLI
[Raw transfer]




C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]




C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]




C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]




C5P_B_7(4DIE)
?
[Raw transfer]




C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]




C_F_6(1KDP)
KCY_ECOLI
[Raw transfer]




DOC_F_6(1KDT)
KCY_ECOLI
[Raw transfer]




C5P_D_11(4DIE)
?
[Raw transfer]




DC_C_3(2FEO)
KCY_ECOLI
[Raw transfer]




C5P_A_5(4DIE)
?
[Raw transfer]




DOC_G_7(1KDT)
KCY_ECOLI
[Raw transfer]




ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




ADP_A_2(2IYV)
AROK_MYCTU
[Raw transfer]




22 PsiBlast_CBE 90.2468%-123 - C3 -4DIE 5.5 ?
126 HHSearch 89.0072%-118 * C3 *3R20 3.3 ?
1 PsiBlast_PDB 88.5373%-118 - C3 -3R20 3.3 ?
23 PsiBlast_CBE 87.7368%-128 - C3 -4DIE 6.0 ?
3 PsiBlast_PDB 87.2868%-131 - C3 -4DIE 5.0 ?
21 PsiBlast_CBE 87.1968%-129 - C3 -4DIE 5.6 ?
2 PsiBlast_PDB 86.7368%-128 - C3 -3R8C - ? -
8 PsiBlast_PDB 78.3140%-101 - C3 -1KDO 8.7 KCY_ECOLI
11 PsiBlast_PDB 78.0640%-102 - C3 -1KDT 6.2 KCY_ECOLI
26 PsiBlast_CBE 78.0540%-104 - C3 -1KDP 6.0 KCY_ECOLI
7 PsiBlast_PDB 77.9540%-107 - C3 -2CMK 5.8 KCY_ECOLI
24 PsiBlast_CBE 77.5840%-105 - C3 -1KDT 4.9 KCY_ECOLI
27 PsiBlast_CBE 77.2740%-106 - C3 -1KDO 8.7 KCY_ECOLI
9 PsiBlast_PDB 77.0440% -96 - C3 -1KDP 7.6 KCY_ECOLI
6 PsiBlast_PDB 76.7540%-111 - C3 -1CKE - KCY_ECOLI -
4 PsiBlast_PDB 76.2340%-103 - C3 -1Q3T - KCY_STRPN -
29 PsiBlast_CBE 76.1938%-106 - C3 -2H92 8.5 KCY_STAAW
125 HHSearch 76.1438%-108 - C3 -1CKE - KCY_ECOLI -
12 PsiBlast_PDB 75.9939%-112 - C3 -2FEM - KCY_ECOLI -
10 PsiBlast_PDB 75.7740%-100 - C3 -1KDR 5.3 KCY_ECOLI
14 PsiBlast_PDB 75.5138%-106 - C3 -2H92 8.4 KCY_STAAW
25 PsiBlast_CBE 75.1740% -93 - C3 -1KDR 5.2 KCY_ECOLI
28 PsiBlast_CBE 75.0838%-104 - C3 -2H92 9.4 KCY_STAAW
128 HHSearch 74.7338%-105 - C3 -2H92 8.5 KCY_STAAW
16 PsiBlast_PDB 74.5439%-101 - C3 -3AKD 7.9 KCY_THET8
127 HHSearch 74.4540% -96 - C3 -3AKE 6.9 KCY_THET8
17 PsiBlast_PDB 74.2939% -99 - C3 -3AKE 6.9 KCY_THET8
15 PsiBlast_PDB 73.5339% -98 - C3 -3AKC 7.2 KCY_THET8
13 PsiBlast_PDB 70.8039%-102 - C3 -2FEO 4.5 KCY_ECOLI
142 HHSearch 25.2739% 2 - C3 -2IYV 4.9 AROK_MYCTU