@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3636: (2016-02-19 )
MAQKIVRVGDIQIGNDLPFVLFGGMNVLESRDLAMQVCEEYVRVTEKLGIPYVFKASFDKANRSSIHSFRGPGLEEGMKIFEEIKKTFKVPVITDVHEPFQAQPVAEVCDIIQLPAFLSRQTDLVVAMARTNAVINIKKAQFLAPQEMKHILTKCEEAGNDRLILCERGSSFGYNNLVVDMLGFGIMKQFEYPVFFDVTHALQMPGGRADSAGGRRAQVTDLAKAGLSQKLAGLFLEAHPDPEHAKCDGPCALRLNKLEAFLSQLKQLDELIKSFPAIETA

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DO8_E_5(1X6U)
KDSA_ECOLI
[Raw transfer]




1NT_I_9(2NXG)
KDSA_AQUAE
[Raw transfer]




GOL_B_6(3FYP)
KDSA_NEIMB
[Raw transfer]




PEP_D_9(3FYP)
KDSA_NEIMB
[Raw transfer]




GOL_B_6(3STF)
KDSA_NEIMB
[Raw transfer]




PEP_D_8(3FYO)
KDSA_NEIMB
[Raw transfer]




PEP_A_9(2NWR)
KDSA_AQUAE
[Raw transfer]




PAI_C_2(1G7V)
KDSA_ECOLI
[Raw transfer]




PAI_C_2(1G7V)
KDSA_ECOLI
[Raw transfer]




FPE_E_5(1PHQ)
KDSA_ECOLI
[Raw transfer]




ROB_E_5(1PHW)
KDSA_ECOLI
[Raw transfer]




A5P_B_10(3UND)
?
[Raw transfer]




PEP_E_5(1Q3N)
KDSA_ECOLI
[Raw transfer]




A5P_D_20(3UND)
?
[Raw transfer]




A5P_A_5(3TMQ)
?
[Raw transfer]




A5P_C_15(3UND)
?
[Raw transfer]




A5P_A_5(3UND)
?
[Raw transfer]




PEP_B_2(1G7U)
KDSA_ECOLI
[Raw transfer]




FPE_E_5(1PL9)
KDSA_ECOLI
[Raw transfer]




A5P_K_11(2EF9)
KDSA_AQUAE
[Raw transfer]




A5P_C_14(3TMQ)
?
[Raw transfer]




A5P_G_7(2NXG)
KDSA_AQUAE
[Raw transfer]




EDO_B_12(3TMQ)
?
[Raw transfer]




A5P_I_9(2EF9)
KDSA_AQUAE
[Raw transfer]




1 PsiBlast_PDB 93.60100%-136 - C3 -4LU0 - KDSA_PSEAE -
121 Fugue 89.1470%-125 - C3 -1D9E - KDSA_ECOLI -
52 PsiBlast_CBE 88.6166%-133 - C3 -3FYO 3.6 KDSA_NEIMB
22 PsiBlast_CBE 88.5168%-129 - C3 -1D9E - KDSA_ECOLI -
2 PsiBlast_PDB 88.3968%-125 - C3 -1D9E - KDSA_ECOLI -
58 PsiBlast_CBE 88.3867%-133 - C3 -3STC - KDSA_NEIMB -
21 PsiBlast_CBE 87.7268%-131 - C3 -1D9E - KDSA_ECOLI -
42 PsiBlast_CBE 87.5067%-128 - C3 -4JTL - KDSA_NEIMB -
3 PsiBlast_PDB 87.4868%-118 - C3 -1GG0 - KDSA_ECOLI -
70 PsiBlast_CBE 87.3566%-122 - C3 -3STG - KDSA_NEIMB -
54 PsiBlast_CBE 87.1666%-130 - C3 -4JTI - KDSA_NEIMB -
50 PsiBlast_CBE 86.9467%-126 - C3 -4JTG - KDSA_NEIMB -
12 PsiBlast_PDB 86.8967%-116 - C3 -3E9A - KDSA_VIBC3 -
65 PsiBlast_CBE 86.7266%-126 - C3 -3FYP - KDSA_NEIMB -
69 PsiBlast_CBE 86.6066%-129 - C3 -3STG - KDSA_NEIMB -
60 PsiBlast_CBE 86.5167%-126 - C3 -3STC - KDSA_NEIMB -
51 PsiBlast_CBE 86.5167%-131 - C3 -4JTG - KDSA_NEIMB -
23 PsiBlast_CBE 86.5068%-127 - C3 -1D9E - KDSA_ECOLI -
104 HHSearch 86.4768%-130 * C3 *2QKF - KDSA_NEIMB -
71 PsiBlast_CBE 86.4566%-128 - C3 -3STG - KDSA_NEIMB -
9 PsiBlast_PDB 86.4568%-119 - C3 -1X6U 4.0 KDSA_ECOLI
62 PsiBlast_CBE 85.9066%-129 - C3 -3FYP 3.4 KDSA_NEIMB
11 PsiBlast_PDB 85.6068%-113 - C3 -1G7U 3.6 KDSA_ECOLI
64 PsiBlast_CBE 85.4266%-125 - C3 -3FYP 2.1 KDSA_NEIMB
67 PsiBlast_CBE 85.1268%-123 - C3 -3STF 2.3 KDSA_NEIMB
7 PsiBlast_PDB 84.7468%-119 - C3 -1PL9 2.4 KDSA_ECOLI
6 PsiBlast_PDB 84.6768%-115 - C3 -1PHW 2.2 KDSA_ECOLI
8 PsiBlast_PDB 83.8568%-116 - C3 -1Q3N 1.8 KDSA_ECOLI
122 Fugue 83.5969%-116 - C3 -1G7V 3.1 KDSA_ECOLI
5 PsiBlast_PDB 83.3768%-113 - C3 -1PHQ 2.6 KDSA_ECOLI
77 PsiBlast_CBE 83.0163%-128 - C3 -3TMQ 2.5 ?
4 PsiBlast_PDB 82.7168%-114 - C3 -1G7V 3.1 KDSA_ECOLI
78 PsiBlast_CBE 82.6563%-107 - C3 -3TMQ 4.9 ?
76 PsiBlast_CBE 82.5763%-105 - C3 -3TMQ 4.7 ?
73 PsiBlast_CBE 82.2163%-108 - C3 -3UND 5.1 ?
72 PsiBlast_CBE 81.9863%-110 - C3 -3UND 5.1 ?
74 PsiBlast_CBE 81.8363%-109 - C3 -3UND 5.0 ?
75 PsiBlast_CBE 81.4563%-108 - C3 -3UND 5.0 ?
105 HHSearch 73.9546%-106 - C3 -2NWR 4.4 KDSA_AQUAE
83 PsiBlast_CBE 73.7047%-100 - C3 -2EF9 3.7 KDSA_AQUAE
97 PsiBlast_CBE 73.2747%-105 - C3 -2NXG 5.9 KDSA_AQUAE
98 PsiBlast_CBE 72.9647%-100 - C3 -2NXG 3.6 KDSA_AQUAE
84 PsiBlast_CBE 72.9447% -99 - C3 -2EF9 3.2 KDSA_AQUAE