@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3644: (2016-02-19 )
MSLIDPRAIIDPSARLAADVQVGPWSIVGAEVEIGEGTVIGPHVVLKGPTKIGKHNRIYQFSSVGEDTPDLKYKGEPTRLVIGDHNVIREGVTIHRGTVQDRAETTIGDHNLIMAYAHIGHDSVIGNHCILVNNTALAGHVHVDDWAILSGYTLVHQYCRIGAHSFSGMGSAIGKDVPAYVTVFGNPAEARSMNFEGMRRRGFSSEAIHALRRAYKVVYRQGHTVEEALAELAESAAQFPEVAVFRDSIQSATRGITR

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

U20_A_4(2QIA)
LPXA_ECOLI
[Raw transfer]




U20_A_4(2QIA)
LPXA_ECOLI
[Raw transfer]




U21_X_2(2QIV)
LPXA_ECOLI
[Raw transfer]




U22_C_6(3I3X)
?
[Raw transfer]




U22_B_5(3I3X)
?
[Raw transfer]




U22_A_4(3I3X)
?
[Raw transfer]




S2N_A_4(3I3A)
?
[Raw transfer]




S2N_B_5(3I3A)
?
[Raw transfer]




S2N_C_6(3I3A)
?
[Raw transfer]




UD1_A_3(4R37)
?
[Raw transfer]




FLC_B_4(4E6T)
?
[Raw transfer]




UD1_A_2(2JF3)
LPXA_ECOLI
[Raw transfer]




SOG_D_4(1J2Z)
LPXA_HELPY
[Raw transfer]




SOG_D_4(1J2Z)
LPXA_HELPY
[Raw transfer]




EDO_A_6(4E6U)
?
[Raw transfer]




CHAIN_B_2(4J09)
LPXA_ECOLI
[Raw transfer]

-

EDO_A_9(4E6U)
?
[Raw transfer]




EDO_A_7(4E6U)
?
[Raw transfer]




CHAIN_X_2(2AQ9)
LPXA_ECOLI
[Raw transfer]

-

FLC_C_5(4E6T)
?
[Raw transfer]




26 PsiBlast_CBE 98.53100%-127 - C3 -5DEP - ? -
21 PsiBlast_CBE 97.97100%-124 - C3 -5DG3 - ? -
27 PsiBlast_CBE 97.65100%-127 - C3 -5DEP - ? -
25 PsiBlast_CBE 97.64100%-124 - C3 -5DEP - ? -
23 PsiBlast_CBE 97.46100%-122 - C3 -5DG3 - ? -
2 PsiBlast_PDB 97.38100%-124 - C3 -5DEP - ? -
1 PsiBlast_PDB 97.30100%-126 - C3 -5DEM - ? -
28 PsiBlast_CBE 97.12100%-123 - C3 -5DEP - ? -
29 PsiBlast_CBE 97.10100%-125 - C3 -5DEM - ? -
3 PsiBlast_PDB 97.10100%-127 - C3 -5DG3 - ? -
24 PsiBlast_CBE 96.60100%-121 - C3 -5DG3 - ? -
22 PsiBlast_CBE 96.32100%-131 - C3 -5DG3 - ? -
9 PsiBlast_PDB 82.7054%-115 - C3 -4J09 3.3 LPXA_ECOLI
4 PsiBlast_PDB 82.4354%-116 - C3 -2AQ9 2.7 LPXA_ECOLI
72 HHSearch 81.6654%-114 * C3 *2QIA 6.6 LPXA_ECOLI
8 PsiBlast_PDB 81.6554%-114 - C3 -2QIV 5.3 LPXA_ECOLI
7 PsiBlast_PDB 81.6354%-114 - C3 -2QIA 6.6 LPXA_ECOLI
10 PsiBlast_PDB 81.5354%-114 - C3 -2JF2 - LPXA_ECOLI -
5 PsiBlast_PDB 81.3854%-115 - C3 -2JF3 2.7 LPXA_ECOLI
13 PsiBlast_PDB 80.1752%-117 - C3 -4EQY - LPXA_BURTA -
30 PsiBlast_CBE 79.3250%-110 - C3 -4E6T 3.2 ?
31 PsiBlast_CBE 79.2450%-110 - C3 -4E6T 3.9 ?
11 PsiBlast_PDB 79.1050%-112 - C3 -4E6U 3.1 ?
36 PsiBlast_CBE 76.1741%-113 - C3 -3I3A 5.1 ?
33 PsiBlast_CBE 75.7341%-110 - C3 -3I3X 5.6 ?
15 PsiBlast_PDB 75.5741%-111 - C3 -3I3A 4.3 ?
16 PsiBlast_PDB 75.5641%-109 - C3 -3I3X 4.8 ?
34 PsiBlast_CBE 75.3741%-109 - C3 -3I3X 4.8 ?
35 PsiBlast_CBE 74.7041%-110 - C3 -3I3A 4.5 ?
18 PsiBlast_PDB 74.3336%-107 - C3 -4R37 3.4 ?
20 PsiBlast_PDB 73.7939%-110 - C3 -1J2Z 3.1 LPXA_HELPY
73 HHSearch 71.8840%-104 - C3 -1J2Z 3.1 LPXA_HELPY