@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4277: (2016-02-25 )
MAKEKFERNKPHVNVGTIGHVDHGKTTLTAALTKVCSDTWGGSARAFDQIDNAPEEKARGITINTSHVEYDSAVRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLSRQVGVPYIVVFLNKADMVDDAELLELVEMEVRDLLNTYDFPGDDTPIIIGSALMALEGKDDNGIGVSAVQKLVETLDSYIPEPVRAIDQPFLMPIEDVFSISGRGTVVTGRVERGIIKVQEEVEIVGIKATTKTTCTGVEMFRKLLDEGRAGENVGILLRGTKREDVERGQVLAKPGTIKPHTKFECEVYVLSKEEGGRHTPFFKGYRPQFYFRTTDVTGNCELPEGVEMVMPGDNIKMVVTLIAPIAMEDGLRFAIREGGRTVGAGVVAKIIE

Atome Classification :

(56 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_H_6(1DG1)
EFTU2_ECOLI
[Raw transfer]




GDP_K_10(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_A_3(3U2Q)
?
[Raw transfer]




GDP_A_6(1D8T)
EFTU1_ECOLI
[Raw transfer]




GTP_A_3(3VMF)
EF1A_AERPE
[Raw transfer]




GDP_B_7(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_A_5(1EFC)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]




GDP_B_6(1EFC)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]




GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]




GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]




GNP_A_5(1OB2)
EFTU2_ECOLI
[Raw transfer]




GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]




GDP_B_(1D8T)
EFTU1_ECOLI
[Raw transfer]




GDP_A_5(3U6K)
EFTU1_ECOLI
[Raw transfer]




GDP_B_7(3U6K)
?
[Raw transfer]




GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]




GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GDP_A_4(4G5G)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]




GDP_G_5(1DG1)
EFTU2_ECOLI
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GDP_A_7(1TUI)
EFTU_THEAQ
[Raw transfer]




GNP_A_5(4PC6)
?
[Raw transfer]




GNP_B_7(4PC6)
?
[Raw transfer]




GDP_A_3(1ETU)
EFTU1_ECOLI
[Raw transfer]




G4P_A_5(4ZCM)
?
[Raw transfer]




GDP_B_8(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_D_4(1JNY)
EF1A_SULSO
[Raw transfer]




GDP_B_9(4ZCL)
?
[Raw transfer]




GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]




GNP_A_3(4PC7)
EFTU1_ECOLI
[Raw transfer]




GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]




GDP_B_5(1SKQ)
EF1A_SULSO
[Raw transfer]




GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]




GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]




GDP_A_3(2FX3)
EFTU1_ECOLI
[Raw transfer]




GDP_A_5(4ZCL)
?
[Raw transfer]




GDP_C_9(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_A_4(1SKQ)
EF1A_SULSO
[Raw transfer]




GDP_C_3(1JNY)
EF1A_SULSO
[Raw transfer]




G4P_B_9(4ZCM)
?
[Raw transfer]




GCP_A_2(5A9W)
?
[Raw transfer]




GDP_A_2(5A9X)
?
[Raw transfer]




GCP_A_2(3J25)
TET1_ENTFL
[Raw transfer]




TAC_B_8(2HCJ)
EFTU1_ECOUT
[Raw transfer]




GNP_C_3(2P8W)

[Raw transfer]




1 PsiBlast_PDB 96.2087%-114 - C2 -4IW3 6.4 EFTU1_PSEPK
28 PsiBlast_CBE 96.1684%-118 - C2 -4PC3 - EFTU1_ECOLI -
27 PsiBlast_CBE 95.5084%-119 - C2 -4PC6 6.9 ?
16 PsiBlast_PDB 95.4284%-105 - C2 -1D8T 8.5 EFTU1_ECOLI
25 PsiBlast_CBE 94.9484%-107 - C2 -3U6K 7.1 ?
5 PsiBlast_PDB 94.9184%-110 - C2 -1DG1 8.2 EFTU2_ECOLI
29 PsiBlast_CBE 94.8884%-118 - C2 -4PC2 - ? -
24 PsiBlast_CBE 94.8787%-119 - C2 -4IW3 7.6 EFTU1_PSEPK
23 PsiBlast_CBE 94.7787%-114 - C2 -4J0Q - EFTU1_PSEPK -
9 PsiBlast_PDB 94.5084%-106 - C2 -1EFC 8.5 EFTU1_ECOLI
34 PsiBlast_CBE 94.4284%-112 - C2 -1D8T 8.8 EFTU1_ECOLI
4 PsiBlast_PDB 94.1384%-103 - C2 -4G5G 8.5 EFTU1_ECOLI
26 PsiBlast_CBE 94.0284%-108 - C2 -1DG1 7.5 EFTU2_ECOLI
2 PsiBlast_PDB 93.9184%-110 - C2 -3U6K 7.5 EFTU1_ECOLI
32 PsiBlast_CBE 93.8784%-104 - C2 -1EFC 8.4 EFTU1_ECOLI
30 PsiBlast_CBE 93.8384%-124 - C2 -4PC1 - ? -
21 PsiBlast_CBE 93.5087%-117 - C2 -4J0Q - EFTU1_PSEPK -
19 PsiBlast_PDB 93.4784%-123 - C2 -4Q7J - EFTU1_ECOLI -
22 PsiBlast_CBE 93.4087%-114 - C2 -4J0Q - EFTU1_PSEPK -
6 PsiBlast_PDB 93.0384%-120 - C2 -4PC6 6.0 ?
3 PsiBlast_PDB 92.8584%-109 - C2 -3U2Q 6.8 ?
17 PsiBlast_PDB 92.8184%-104 - C2 -2FX3 7.0 EFTU1_ECOLI
8 PsiBlast_PDB 91.2184%-102 - C2 -1OB2 7.2 EFTU2_ECOLI
7 PsiBlast_PDB 88.8684%-113 - C2 -4PC7 7.7 EFTU1_ECOLI
63 PsiBlast_CBE 87.7184%-120 - C2 -2HCJ 3.4 EFTU1_ECOUT
41 PsiBlast_CBE 87.5571% -99 - C2 -1EXM 9.3 EFTU1_THETH
36 PsiBlast_CBE 87.2871%-101 * C2 *4H9G 9.5 EFTU1_THETH
55 PsiBlast_CBE 87.2571%-100 - C2 -4LBW 9.4 EFTU1_THETH
110 HHSearch 87.0373%-108 - C2 -2C78 9.3 EFTU1_THET8
56 PsiBlast_CBE 86.8671%-100 - C2 -4LBV 9.2 EFTU1_THETH
42 PsiBlast_CBE 86.8471%-105 - C2 -1TUI 5.9 EFTU_THEAQ
53 PsiBlast_CBE 86.6871% -98 - C2 -4LBZ 9.2 EFTU1_THETH
54 PsiBlast_CBE 86.6171%-100 - C2 -4LBY 9.1 EFTU1_THETH
52 PsiBlast_CBE 86.5471%-100 - C2 -4LC0 9.3 EFTU1_THETH
44 PsiBlast_CBE 86.3971%-107 - C2 -1TUI 6.3 EFTU_THEAQ
38 PsiBlast_CBE 86.2271% -99 - C2 -1EFT 9.0 EFTU_THEAQ
37 PsiBlast_CBE 86.1471%-105 - C2 -2C78 9.3 EFTU1_THET8
43 PsiBlast_CBE 86.1371%-104 - C2 -1TUI 6.4 EFTU_THEAQ
51 PsiBlast_CBE 86.1171%-100 - C2 -1B23 8.6 EFTU_THEAQ
35 PsiBlast_CBE 85.5771%-100 - C2 -2C77 9.5 EFTU2_THET8
70 PsiBlast_CBE 69.0734% -97 - C2 -3WY9 7.9 EF1A_PYRHO
113 HHSearch 68.7638% -91 - C2 -3WY9 7.9 EF1A_PYRHO
81 PsiBlast_CBE 68.5631%-104 - C2 -1JNY 8.1 EF1A_SULSO
79 PsiBlast_CBE 68.3031%-101 - C2 -1SKQ 8.2 EF1A_SULSO
78 PsiBlast_CBE 67.1231% -99 - C2 -1SKQ 6.9 EF1A_SULSO
80 PsiBlast_CBE 66.3131%-100 - C2 -1JNY 7.9 EF1A_SULSO
73 PsiBlast_CBE 65.2431% -78 - C2 -3VMF 7.8 EF1A_AERPE
18 PsiBlast_PDB 61.2084%-122 - C2 -1ETU 4.5 EFTU1_ECOLI
84 PsiBlast_CBE 41.7232% -73 - C2 -4ZCM 4.8 ?
86 PsiBlast_CBE 41.5032% -72 - C2 -4ZCL 5.0 ?
85 PsiBlast_CBE 41.2032% -73 - C2 -4ZCM 4.4 ?
87 PsiBlast_CBE 41.1932% -69 - C2 -4ZCL 5.8 ?
83 PsiBlast_CBE 38.0032% -80 - C2 -5A9W 4.8 ?
82 PsiBlast_CBE 36.6732% -70 - C2 -5A9X 3.3 ?
90 PsiBlast_CBE 25.0435% -48 - C2 -3J25 3.0 TET1_ENTFL
108 Fugue 3.3948% 160 - C2 -2P8W 2.7