@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4410: (2016-02-27 )
MNLCLDSLLNGTQDPKAFGRVAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHGRGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCREAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAAWREAARYDSQVLVEQWISGPEFTVATLRGQVLPAIRLGTPHTFYDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDALGIQGWGRADVMQDAEGRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSREARG

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PHY_A_5(1IOW)
?
[Raw transfer]




ATP_A_7(2ZDQ)
DDL_THET8
[Raw transfer]




ATP_B_8(2ZDQ)
DDL_THET8
[Raw transfer]




ADP_A_4(2DLN)
DDLB_ECOLI
[Raw transfer]




ADP_A_5(1IOV)
DDLB_ECOLI
[Raw transfer]




ATP_A_3(4C5C)
DDLB_ECOLI
[Raw transfer]




ADP_B_12(4C5B)
DDLB_ECOLI
[Raw transfer]




ADP_B_10(4C5A)
DDLB_ECOLI
[Raw transfer]




ATP_B_11(4C5C)
DDLB_ECOLI
[Raw transfer]




ADP_C_9(2ZDG)
DDL_THET8
[Raw transfer]




ADP_A_4(4C5A)
DDLB_ECOLI
[Raw transfer]




ADP_A_3(4C5B)
DDLB_ECOLI
[Raw transfer]




ADP_A_4(1IOW)
DDLB_ECOLI
[Raw transfer]




ADP_B_15(1E4E)
VANA_ENTFC
[Raw transfer]




ADP_A_3(1E4E)
VANA_ENTFC
[Raw transfer]




PHY_A_6(1EHI)
DDL_LEUMM
[Raw transfer]




ADP_A_12(2ZDH)
DDL_THET8
[Raw transfer]




ADP_A_6(2I8C)
DDL_STAAC
[Raw transfer]




ATP_A_6(3R5X)
DDL_BACAN
[Raw transfer]




ATP_A_6(3R5X)
DDL_BACAN
[Raw transfer]




PHY_A_4(1E4E)
VANA_ENTFC
[Raw transfer]




ANP_A_2(4L1K)
?
[Raw transfer]




DAL_B_5(2YZM)
DDL_THET8
[Raw transfer]




ADP_A_4(1IOW)
?
[Raw transfer]




DAL_A_4(2YZM)
DDL_THET8
[Raw transfer]




DAL_C_6(2YZM)
DDL_THET8
[Raw transfer]




EDO_A_4(4EG0)
DDL_BURA4
[Raw transfer]




DAL_D_17(2ZDH)
DDL_THET8
[Raw transfer]




EDO_A_3(3R23)
DDL_BACAN
[Raw transfer]




G1L_A_3(2I80)
DDL_STAAC
[Raw transfer]




G1L_B_4(2I80)
DDL_STAAC
[Raw transfer]




EDO_B_5(4EG0)
DDL_BURA4
[Raw transfer]




7 PsiBlast_PDB 95.5452%-113 - C1 -1IOW 7.6 DDLB_ECOLI
4 PsiBlast_PDB 95.4252%-110 - C1 -4C5C 8.5 DDLB_ECOLI
6 PsiBlast_PDB 94.7152%-112 - C1 -2DLN 6.4 DDLB_ECOLI
22 PsiBlast_CBE 94.3952%-108 - C1 -4C5C 8.5 DDLB_ECOLI
3 PsiBlast_PDB 94.3052%-109 - C1 -4C5B 7.8 DDLB_ECOLI
24 PsiBlast_CBE 94.1752%-109 - C1 -4C5A 7.0 DDLB_ECOLI
23 PsiBlast_CBE 94.1452%-110 - C1 -4C5B 7.7 DDLB_ECOLI
5 PsiBlast_PDB 93.0152%-108 - C1 -1IOV 6.8 DDLB_ECOLI
2 PsiBlast_PDB 92.8652%-107 - C1 -4C5A 7.7 DDLB_ECOLI
10 PsiBlast_PDB 92.1353%-124 - C1 -4EGQ - DDL_BURP1 -
9 PsiBlast_PDB 91.3352%-115 - C1 -4EG0 3.4 DDL_BURA4
1 PsiBlast_PDB 91.1457%-111 - C1 -3V4Z - DDL_YERPE -
21 PsiBlast_CBE 91.0857%-123 - C1 -3V4Z - DDL_YERPE -
8 PsiBlast_PDB 90.0654%-118 - C1 -4EGJ - DDL_BURXL -
25 PsiBlast_CBE 89.3452%-115 - C1 -4EG0 2.0 DDL_BURA4
86 HHSearch 82.2434% -91 - C1 -3I12 - DDLA_SALTY -
80 HHSearch 81.9331%-107 - C1 -3K3P - DDL_STRMU -
79 HHSearch 81.7736% -96 * C1 *3E5N - ? -
81 HHSearch 80.9836% -98 - C1 -3LWB - DDL_MYCTU -
30 PsiBlast_CBE 80.4534%-103 - C1 -4ME6 - ? -
20 PsiBlast_PDB 79.2734%-102 - C1 -4L1K 4.9 ?
29 PsiBlast_CBE 78.8331%-101 - C1 -2I80 5.2 DDL_STAAC
11 PsiBlast_PDB 77.7436%-100 - C1 -3R23 2.7 DDL_BACAN
84 HHSearch 77.7332% -78 - C1 -1E4E 4.9 VANA_ENTFC
31 PsiBlast_CBE 77.7031% -77 - C1 -1E4E 5.0 VANA_ENTFC
15 PsiBlast_PDB 77.3031%-101 - C1 -2I80 5.3 DDL_STAAC
17 PsiBlast_PDB 77.2831% -98 - C1 -2I8C 3.8 DDL_STAAC
37 PsiBlast_CBE 77.1235% -84 - C1 -2ZDQ 8.0 DDL_THET8
39 PsiBlast_CBE 76.9935% -86 - C1 -2ZDH 2.5 DDL_THET8
32 PsiBlast_CBE 76.9031% -78 - C1 -1E4E 5.7 VANA_ENTFC
38 PsiBlast_CBE 76.7835% -85 - C1 -2ZDQ 6.5 DDL_THET8
52 PsiBlast_CBE 76.2935% -89 - C1 -2YZM 3.6 DDL_THET8
12 PsiBlast_PDB 76.0936%-105 - C1 -3R5X 5.3 DDL_BACAN
85 HHSearch 75.5835%-100 - C1 -3R5X 5.3 DDL_BACAN
42 PsiBlast_CBE 75.2035% -84 - C1 -2ZDH 6.6 DDL_THET8
44 PsiBlast_CBE 74.7535% -85 - C1 -2ZDG 5.5 DDL_THET8
50 PsiBlast_CBE 74.0635% -89 - C1 -2YZM 3.8 DDL_THET8
51 PsiBlast_CBE 73.4335% -92 - C1 -2YZM 3.4 DDL_THET8
71 Fugue 71.8149%-100 - C1 -1IOW Error ?
73 Fugue 44.3556%-104 - C1 -1IOW Error ?