@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4678: (2016-02-29 )
MSDAISFRPMTEADLDAVLKIEYAAFSHPWTRGIFSEGLKNYHCWLMFEGSQQVGHGVIQIILDEAHLLNITVKPESQGRGLGLRLLEHLMREAAGHQARECFLEVRASNQAAYRLYERYGFNEIGRRRDYYPAVGGREDALVMACTLFD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACO_B_7(2CNS)
?
[Raw transfer]



ACO_A_5(2CNS)
?
[Raw transfer]



ACO_C_9(2CNS)
?
[Raw transfer]



COA_F_9(2CNM)
?
[Raw transfer]



COA_C_10(2CNT)
?
[Raw transfer]



COA_A_5(2CNT)
?
[Raw transfer]



COA_B_7(2CNT)
?
[Raw transfer]



COA_D_12(2CNT)
?
[Raw transfer]



COA_A_5(2CNT)
?
[Raw transfer]



CHAIN_F_6(2CNM)
?
[Raw transfer]
-
CHAIN_E_5(2CNM)
?
[Raw transfer]
-
CHAIN_D_4(2CNM)
?
[Raw transfer]
-
22 PsiBlast_CBE 84.7441%-130 - C2 -2CNT 9.0 ?
77 HHSearch 84.0540%-127 - C2 -2CNT 9.6 ?
26 PsiBlast_CBE 84.0041%-129 - C2 -2CNM 8.7 ?
3 PsiBlast_PDB 82.2741%-125 - C2 -2CNT 9.6 ?
27 PsiBlast_CBE 81.9741%-127 - C2 -2CNM 6.4 ?
23 PsiBlast_CBE 81.3841%-126 - C2 -2CNT 9.8 ?
24 PsiBlast_CBE 81.0341%-130 - C2 -2CNS 10.3 ?
21 PsiBlast_CBE 80.9141%-126 - C2 -2CNT 10.3 ?
1 PsiBlast_PDB 80.6441%-124 * C2 *2CNM 6.6 ?
2 PsiBlast_PDB 80.5241%-128 - C2 -2CNS 10.2 ?
25 PsiBlast_CBE 79.6241%-124 - C2 -2CNS 10.0 ?
7 PsiBlast_PDB 71.8628%-128 - C2 -2X7B - Y209_SULSO -
6 PsiBlast_PDB 71.0928%-130 - C2 -4R3L - Y209_SULSO -
4 PsiBlast_PDB 71.0528%-130 - C2 -4LX9 - Y209_SULSO -
15 PsiBlast_PDB 70.6527%-118 - C2 -4JWP - ? -
14 PsiBlast_PDB 70.5027%-117 - C2 -4J3G - ? -
5 PsiBlast_PDB 69.3228%-127 - C2 -4R3K - Y209_SULSO -
85 HHSearch 67.6222%-127 * C1 *1YR0 - ? -
80 HHSearch 66.7922%-134 - C1 -2GE3 - ? -
82 HHSearch 65.5023%-122 - C1 -3DR6 - MDDA_SALTY -