@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4898: (2016-03-02 )
MKIRRKTAVPRNAGAVLPMLACLAAQAAEGGFLEDAKTDLVLRNYYFNRDFRDHDAGKSLVDEWAQGFILKFSSGYTPGTVGVGLDAIGLFGVKLNSGRGTSNSELLPLHDDGRAADNYGRVGVAAKLRVSASELKIGEMLPDIPLLRYDDGRLLPQTFRGFAVVSRELPGLALQAGRFDAVSLRNSADMQDLSAWSAPTQKSDGFNYAGAEYRFNRERTQLGLWHGQLEDVYRQSYANLLHKQRVGDWTLGANLGLFVDRDDGAARAGEIDSHTVYGLFSAGIGLHTFYLGLQKVGGDSGWQSVYGSSGRSMGNDMFNGNFTNADERSWQVRYDYDFVGLGWPGLIGMVRYGHGSNATTKAGSGGKEWERDVELGYTVQSGPLARLNVRLNHASNRRSFNSDFDQTRLVVSYPLSW

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C8E_A_6(3SYS)
?
[Raw transfer]



C8E_A_6(2Y2X)
?
[Raw transfer]



C8E_B_24(2Y2X)
?
[Raw transfer]



C8E_A_15(2QTK)
?
[Raw transfer]



C8E_B_5(2QTK)
?
[Raw transfer]



C8E_A_9(2ODJ)
PORD_PSEAE
[Raw transfer]



PGV_A_19(4FMS)
?
[Raw transfer]



C8E_A_9(2Y2X)
?
[Raw transfer]



C8E_A_5(4FT6)
?
[Raw transfer]



C8E_B_26(3SYS)
?
[Raw transfer]



C8E_B_4(3SZD)
?
[Raw transfer]



C8E_B_9(4FMS)
?
[Raw transfer]



C8E_A_9(2Y0K)
?
[Raw transfer]



C8E_B_5(3SZD)
?
[Raw transfer]



C8E_A_6(4FSP)
?
[Raw transfer]



C8E_A_2(3SY7)
PORD_PSEAE
[Raw transfer]



C8E_A_7(3SZV)
?
[Raw transfer]
2 PsiBlast_PDB 99.28100% -43 - C8 -2Y2X 2.3 ?
3 PsiBlast_PDB 99.26100% -43 - C8 -3SYS 2.5 ?
23 PsiBlast_CBE 99.03100% -41 - C8 -3SYS 2.8 ?
21 PsiBlast_CBE 98.93100% -39 - C8 -2Y2X 3.1 ?
34 HHSearch 98.1399% -43 - C8 -2Y2X 3.7 ?
1 PsiBlast_PDB 96.58100% -40 - C8 -2QTK 2.2 ?
22 PsiBlast_CBE 95.01100% -40 - C8 -2QTK 1.7 ?
26 PsiBlast_CBE 85.0552% -28 - C8 -3JTY - ? -
24 PsiBlast_CBE 83.7556% -35 - C8 -4FMS 1.2 ?
6 PsiBlast_PDB 83.6152% -26 - C8 -3JTY - ? -
5 PsiBlast_PDB 83.3156% -27 - C8 -3SZD 2.0 ?
25 PsiBlast_CBE 83.1756% -32 - C8 -3SZD 2.5 ?
4 PsiBlast_PDB 82.5056% -30 - C8 -4FMS 1.6 ?
7 PsiBlast_PDB 81.2052% -29 - C8 -4FT6 2.4 ?
17 PsiBlast_PDB 80.6636% -35 - C8 -4FRX - ? -
29 PsiBlast_CBE 79.5536% -31 - C8 -4FRX - ? -
28 PsiBlast_CBE 78.1742% -29 - C8 -3T24 - ? -
12 PsiBlast_PDB 78.1643% -33 - C8 -4FSP 2.1 ?
11 PsiBlast_PDB 78.1542% -30 - C8 -4FRT - ? -
40 HHSearch 76.9641% -36 - C8 -2Y0H - ? -
16 PsiBlast_PDB 74.6843% -25 - C8 -2Y0K 2.1 ?
39 HHSearch 73.6841% -26 * C8 *3SZV 1.9 ?
19 PsiBlast_PDB 70.6536% -28 - C8 -2ODJ 2.4 PORD_PSEAE
37 HHSearch 70.6135% -19 - C8 -3SY7 2.1 PORD_PSEAE