@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4920: (2016-03-02 )
MQQIQRDIAQALQVQPPFQSEADVQAQIARRIAFIQQCLKDSGLKTLVLGISGGVDSLTAGLLAQRAVEQLREQTGDQAYRFIAVRLPYQVQQDEADAQASLATIRADEEQTVNIGPSVKALAEQLEALEGLEPAKSDFVIGNIKARIRMVAQYAIAGARGGLVIGTDHAAEAVMGFFTKFGDGACDLAPLSGLAKHQVRALARALGAPENLVEKIPTADLEDLRPGHPDEASHGVTYAEIDAFLHGQPLREEAARVIVDTYHKTQHKRELPKAP

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADJ_B_19(1KQP)
NADE_BACSU
[Raw transfer]



APC_B_6(2PZ8)
NADE_BACAN
[Raw transfer]



APC_A_5(2PZ8)
NADE_BACAN
[Raw transfer]



APC_A_6(1IH8)
NADE_BACSU
[Raw transfer]



ATP_A_6(1EE1)
NADE_BACSU
[Raw transfer]



AMP_A_4(1FYD)
NADE_BACSU
[Raw transfer]



AMP_A_9(1NSY)
NADE_BACSU
[Raw transfer]



AMP_C_17(3FIU)
?
[Raw transfer]



AMP_A_8(2PZA)
NADE_BACAN
[Raw transfer]



AMP_D_22(3FIU)
?
[Raw transfer]



AMP_B_7(2PZA)
NADE_BACAN
[Raw transfer]



AMP_A_7(3FIU)
?
[Raw transfer]



AMP_A_5(1WXI)
NADE_ECOLI
[Raw transfer]



AMP_A_7(3FIU)
?
[Raw transfer]



AMP_A_5(1WXI)
NADE_ECOLI
[Raw transfer]



AMP_B_12(3FIU)
?
[Raw transfer]



NAD_B_10(2NSY)
NADE_BACSU
[Raw transfer]



NAD_A_8(2NSY)
NADE_BACSU
[Raw transfer]



NAD_A_8(2NSY)
NADE_BACSU
[Raw transfer]



DND_C_3(1IFX)
NADE_BACSU
[Raw transfer]



DND_B_5(1EE1)
NADE_BACSU
[Raw transfer]



AMP_A_3(1WXE)
NADE_ECOLI
[Raw transfer]



ATP_B_5(1NSY)
NADE_BACSU
[Raw transfer]



DND_B_6(1XNG)
NADE_HELPY
[Raw transfer]



NAD_B_2(1WXH)
NADE_ECOLI
[Raw transfer]



DND_D_4(1IFX)
NADE_BACSU
[Raw transfer]
1 PsiBlast_PDB 98.88100%-108 - C6 -4XFD - NADE_PSEAE -
32 PsiBlast_CBE 83.7051% -92 - C6 -4Q16 - NADE_DEIRA -
13 PsiBlast_PDB 83.3751% -87 - C6 -4Q16 - NADE_DEIRA -
30 PsiBlast_CBE 82.7351% -87 - C6 -4Q16 - NADE_DEIRA -
46 HHSearch 82.2049% -94 - C6 -1WXI 4.5 NADE_ECOLI
3 PsiBlast_PDB 82.1455% -92 - C6 -3Q4G - NADE_VIBCH -
2 PsiBlast_PDB 81.7055% -99 - C6 -3DPI - NADE_BURP1 -
6 PsiBlast_PDB 81.5552% -86 - C6 -3HMQ - NADE_SALTY -
4 PsiBlast_PDB 81.4751% -83 - C6 -2PZ8 7.2 NADE_BACAN
68 Fugue 81.2349% -79 * C6 *2NSY 7.0 NADE_BACSU
10 PsiBlast_PDB 81.1748% -85 - C6 -1FYD 4.3 NADE_BACSU
27 PsiBlast_CBE 81.1648% -99 - C6 -1IH8 - NADE_BACSU -
22 PsiBlast_CBE 81.0451% -82 - C6 -2PZA 4.1 NADE_BACAN
17 PsiBlast_PDB 81.0249% -93 - C6 -1WXH 6.4 NADE_ECOLI
29 PsiBlast_CBE 81.0048% -99 - C6 -1EE1 5.8 NADE_BACSU
5 PsiBlast_PDB 80.9651% -82 - C6 -2PZA 4.4 NADE_BACAN
31 PsiBlast_CBE 80.9251% -96 - C6 -4Q16 - NADE_DEIRA -
28 PsiBlast_CBE 80.7948%-102 - C6 -1IFX 6.2 NADE_BACSU
23 PsiBlast_CBE 80.7951% -85 - C6 -2PZ8 7.0 NADE_BACAN
15 PsiBlast_PDB 80.7649% -91 - C6 -1WXF - NADE_ECOLI -
24 PsiBlast_CBE 80.4148% -80 - C6 -2NSY 6.1 NADE_BACSU
18 PsiBlast_PDB 80.3249% -87 - C6 -1WXI 4.5 NADE_ECOLI
8 PsiBlast_PDB 79.8748% -80 - C6 -2NSY 7.0 NADE_BACSU
14 PsiBlast_PDB 79.8549% -91 - C6 -1WXE 3.5 NADE_ECOLI
25 PsiBlast_CBE 79.7848% -80 - C6 -1NSY 3.7 NADE_BACSU
26 PsiBlast_CBE 79.7648% -79 - C6 -1KQP 9.0 NADE_BACSU
11 PsiBlast_PDB 79.7248%-102 - C6 -1IFX 6.1 NADE_BACSU
9 PsiBlast_PDB 79.6848% -77 - C6 -1EE1 7.1 NADE_BACSU
12 PsiBlast_PDB 79.3048% -79 - C6 -1IH8 6.5 NADE_BACSU
7 PsiBlast_PDB 78.4648% -78 - C6 -1NSY 4.7 NADE_BACSU
47 HHSearch 69.5035% -72 - C6 -3FIU 4.2 ?
69 Fugue 67.2631% -70 - C6 -1XNG 6.8 NADE_HELPY
33 PsiBlast_CBE 63.8536% -58 - C6 -3FIU 4.4 ?
35 PsiBlast_CBE 63.6436% -55 - C6 -3FIU 4.5 ?
34 PsiBlast_CBE 63.4736% -57 - C6 -3FIU 4.7 ?
19 PsiBlast_PDB 63.2136% -57 - C6 -3FIU 4.2 ?