@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VMC3: (2017-11-07 )
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAEETWTGRGKQPRWLVAEIEKGAKLEDFLI
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------.........10........20.-----------------.......30........40........50........60.--.......70........80........90......-..------100......------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------MKP
D
I
S
EL
S
V
E
E
L
K
R
L
Q
E
E
A
E
A
-----------------
L
I
ASKK
D
Q
A
I
E
D
A
Y
N
Q
I
I
E
I
A
E
NVGF
S
V
E
Q
L
L
E
F
G
A
Q
K
R
K
--
K
TTRKSVEPRYRNKNNAEETWTGRGKQPR
W
L
V
A
E
I
-EK------GAKLEDFLI------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
69.49
37%
26
- C2 -
-
2LEV
2
?
A:
[1-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
H
H
H
H
H
--
S
M
G
N
S
S
K
G
V
Y
Y
R
N
E
E
G
--
Q
T
W
S
G
V
G
R
Q
P
R
W
L
K
E
A
L
-
L
N
------
G
M
K
K
E
D
F
L
V
KDTEEE------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
PsiBlast_PDB
63.59
31%
-174
- C2 -
-
5JBH
-
RS10_PYRFU
L:
[2-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
A
R
I
-----------------
K
I
A
S
T
N
V
R
S
L
D
E
V
A
N
Q
I
K
Q
I
A
E
R
T
G
V
R
M
S
G
P
I
P
L
P
T
K
R
I
R
--
I
T
T
R
K
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
HHSearch
63.49
46%
15
- C2 -
-
2LEV
2
?
A:
[11-51]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
S
S
K
G
V
Y
Y
R
N
E
E
--
G
Q
T
W
S
G
V
G
R
Q
P
R
W
L
K
E
A
L
-
L
N
------
G
M
K
K
E
D
F
L
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
62.88
20%
27
- C2 -
-
4Z24
1
YR135_MIMIV
A:
[4-652]
NLTGD
I
V
I
I
G
AG
A
A
G
S
L
L
A
H
Y
L
A
R
F
S
N
M
K
I
I
L
L
E
AGHSHFNDPVVTDPMGFFGKYNPPNENISMSQNPSYSWQGAQEPNTGAYG
N
R
P
I
I
A
H
G
MGFGGSTMINRLNLVVGG
R
T
V
F
D
NDWPVGWKYDDV
K
N
Y
F
R
R
V
L
V
D
I
NPVRDN
T
K
A
S
I
T
S
V
A
L
D
A
L
R
I
I
A
E
Q
Q
I
A
S
GEPVDFLLNKATGNVP
N
V
E
K
T
T
P
D
A
V
P
L
N
L
N
D
Y
E
G
V
N
S
V
V
A
F
S
---
S
F
Y
M
G
V
N
Q
L
S
DG
N
Y
I
R
K
Y
A
G
N
T
Y
L
N
R
N
Y
V
D
E
N
G
R
G
I
G
K
F
S
G
---
L
R
V
-
V
S
------
D
A
V
V
D
R
I
I
F
KGNRAV
G
V
N
Y
I
D
REG
I
M
H
Y
V
K
V
N
K
E
V
V
V
TSGAFY
T
P
T
I
L
Q
R
S
GIGD
F
T
Y
L
S
S
I
GVKNLVYNNPLVGTG
L
K
N
H
Y
S
P
V
T
I
T
R
V
H
G
E
P
S
E
V
S
R
F
L
SNMAANPTNMGFKGLAELGFHRLDPNKPANANT
V
T
Y
R
K
Y
Q
L
M
M
T
A
G
VGIP
A
E
Q
Q
Y
L
S
GLSPSSNN
L
F
T
L
I
ADDIRFA
P
E
G
Y
I
K
I
GTPNIPRDVP
K
I
F
F
N
T
F
V
T
Y
T
P
T
SAPADQQ
W
P
I
A
Q
K
T
L
A
P
L
I
S
A
L
L
G
Y
D
I
I
Y
Q
T
L
M
S
M
N
Q
T
A
R
D
S
GFQ
V
S
L
E
MVYPL
N
D
L
I
Y
K
L
H
N
G
L
A
T
YGANWWHYFVPTLVGDDT
P
A
G
R
E
F
A
D
T
L
S
K
L
S
Y
Y
P
R
VG
A
H
L
D
SHQGCSCSIGRTVDSNLKVIGTQ
N
V
R
V
A
D
LSAAAFPPGGNT
W
A
T
A
S
M
I
G
A
R
A
V
D
L
I
L
GFPYLRDLPVND
V
P
I
L
N
VN
12
PsiBlast_PDB
62.68
31%
-174
- C2 -
-
5JB3
-
RS10_PYRFU
L:
[2-52]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
A
R
I
-----------------
K
I
A
S
T
N
V
R
S
L
D
E
V
A
N
Q
I
K
Q
I
A
E
R
T
G
V
R
M
S
G
P
I
P
L
P
T
K
R
I
R
--
I
T
T
R
K
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
62.44
50%
17
- C2 -
-
2LEV
2
?
A:
[18-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
N
E
E
G
--
Q
T
W
S
G
V
G
R
Q
P
R
W
L
K
E
A
L
-
L
N
------
G
M
K
K
E
D
F
L
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
59.73
30%
-30
- C2 -
-
1YI8
-
SYW2_DEIRA
B:
[43-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
Q
N
R
V
R
L
Q
D
E
A
E
L
-----------------
F
V
L
L
A
D
V
Q
A
L
T
D
H
F
D
R
P
E
Q
V
R
E
N
V
L
A
V
A
L
D
Y
L
A
A
G
L
D
P
Q
K
--
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
PsiBlast_PDB
58.85
30%
-34
- C2 -
-
2A4M
-
SYW2_DEIRA
A:
[43-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
Q
N
R
V
R
L
Q
D
E
A
E
L
-----------------
F
V
L
L
A
D
V
Q
A
L
T
D
H
F
D
R
P
E
Q
V
R
E
N
V
L
A
V
A
L
D
Y
L
A
A
G
L
D
P
Q
K
--
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
PsiBlast_PDB
58.70
30%
-30
- C2 -
-
1YID
-
SYW2_DEIRA
B:
[43-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
Q
N
R
V
R
L
Q
D
E
A
E
L
-----------------
F
V
L
L
A
D
V
Q
A
L
T
D
H
F
D
R
P
E
Q
V
R
E
N
V
L
A
V
A
L
D
Y
L
A
A
G
L
D
P
Q
K
--
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
37
HHSearch
58.64
47%
-23
- C2 -
-
2L92
-
BV3F_BURVG
A:
[72-105]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
V
P
K
Y
R
D
P
A
T
-
G
K
T
W
S
G
R
G
R
Q
P
A
W
L
G
N
-------------
D
P
A
A
F
L
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
PsiBlast_CBE
58.22
36%
-124
- C2 -
-
4LYP
1
?
B:
[362-397]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
K
D
E
Y
Y
Q
K
A
F
N
Q
I
V
S
L
A
S
N
R
S
F
S
G
S
N
F
W
A
Y
G
G
E
G
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
57.97
43%
-44
- C2 -
-
2L93
-
HNS_SALTY
A:
[99-135]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
D
E
N
G
E
T
K
T
W
T
G
Q
G
R
T
P
A
V
I
K
K
A
M
E
E
Q
------
G
K
Q
L
E
D
F
L
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
57.86
36%
-121
- C2 -
-
4LYP
2
?
A:
[362-397]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
K
D
E
Y
Y
Q
K
A
F
N
Q
I
V
S
L
A
S
N
R
S
F
S
G
S
N
F
W
A
Y
G
G
E
G
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
57.74
36%
-130
- C2 -
-
4LYQ
2
?
A:
[362-397]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
K
D
E
Y
Y
Q
K
A
F
N
Q
I
V
S
L
A
S
N
R
S
F
S
G
S
N
F
W
A
Y
G
G
E
G
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
PsiBlast_CBE
57.39
36%
-126
- C2 -
-
4NRR
1
?
B:
[362-397]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
K
D
E
Y
Y
Q
K
A
F
N
Q
I
V
S
L
A
S
N
R
S
F
S
G
S
N
F
W
A
Y
G
G
E
G
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
56.65
36%
-135
- C2 -
-
4NRR
1
?
A:
[362-397]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
K
D
E
Y
Y
Q
K
A
F
N
Q
I
V
S
L
A
S
N
R
S
F
S
G
S
N
F
W
A
Y
G
G
E
G
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
56.56
36%
-117
- C2 -
-
4LYR
1
?
A:
[362-397]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
K
D
E
Y
Y
Q
K
A
F
N
Q
I
V
S
L
A
S
N
R
S
F
S
G
S
N
F
W
A
Y
G
G
E
G
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
PsiBlast_PDB
56.26
30%
-32
- C2 -
-
1YIA
1
SYW2_DEIRA
B:
[43-98]
--------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
Q
N
R
V
R
L
Q
D
E
A
E
L
-----------------
F
V
L
L
A
D
V
Q
A
L
T
D
H
F
D
R
P
E
Q
V
R
E
N
V
L
A
V
A
L
D
Y
L
A
A
G
L
D
P
Q
K
--
T
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
56.13
35%
-8
- C2 -
-
2LRX
-
A:
[9-45]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
T
D
V
N
G
E
T
K
T
W
T
G
Q
G
R
T
P
K
P
I
A
Q
A
L
-
A
E
------
G
K
S
L
D
D
F
L
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
55.73
34%
54
- C2 -
-
2L92
-
BV3F_BURVG
A:
[71-114]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
T
V
P
K
Y
R
D
P
A
T
-
G
K
T
W
S
G
R
G
R
Q
P
A
W
L
G
N
D
P
-
A
A
F
L
I
Q
PD
L
P
A
I
L
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------