@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VTL2: (2017-12-14 )
MQRQLVSSSRVEQKNWDRPVLSEWIEQFVNTVQAVQTPVQIVAHSFGCLTSVAALAEHPELQLQVKKLILVAPANPARFGEAGFARHSLTDYKDYFHQLKINVPATLLISENDPWLDFFDALQLAKSWQLTPINLGQVGHINVASGFGPFPDLLNHLLPEDSMCSHSSIDPVKTHFSLKFA
Atome Classification :
(20 SA)
---------------------.......---..10..-.....-----------.-----------20........30.....-...40........50........60........70........80----------------.-----------------------------.--------------------.-------------------.---------.---------.------------------.-----.--------90-----------.-------------.---------------------.---------------.---------.-------.-------.------.--.100.......110...-....--120......--.-130.......140.......--150.......160.......170.......180---------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------MQRQLVS---SSRVEQ-KNWD
R
-----------
P
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-
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A
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EHPE
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K
K
L
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APA
N
P
A
RFGE----------------A-----------------------------G--------------------F-------------------A---------R---------H------------------S-----L--------
T
------------
D
-------------
Y
---------------------
K
---------------
D
---------
Y
-------
F
-------
H
------
Q
--
L
K
INV
P
A
T
L
L
ISEND
P
W
-
L
D
F
F
--
D
A
L
Q
L
A
KSW--Q-LTPINLGQ
V
G
H
I
N
VASGFG
P
--
F
P
D
L
L
N
H
LLPEDSMCSHSSIDP
V
K
T
H
F
S
L
KFA----------------------------
1
PsiBlast_PDB
98.76
28%
-156
- C4 -
-
3BDV
2
?
A:
[39-180]
----------------------
E
R
R
F
P
H
---
W
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---
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------------------------------------------------------------------------------------------------------------------------------------------------------------
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-------
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------
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--
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-
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A
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F
G
P
--
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G
L
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R
L
----------------------------------------------------
13
HHSearch
60.08
14%
-31
- C4 -
-
1IUN
-
?
B:
[56-276]
---------------------------
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F
TDRPENYN---
Y
-----------
S
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EGLNAV----------
W
GYTPSIENMRN------------------
L
--------------------
L
DIF----------------
A
---------
Y
D--------
R
SLVTDELARLRYEASIQP
G
-----
F
--------
Q
------------
E
-------------
S
---------------------
F
SSMFPEPRQRWI---
D
---------
A
-------
L
ASS----
D
------
E
DI
K
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N
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P
---------------------------------------------
12
HHSearch
60.05
14%
-27
- C4 -
-
1IUP
-
?
A:
[56-273]
---------------------------
R
---
V
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A
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-
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TDRPEN
Y
N
---
Y
-----------
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---
E
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A
V
----------
W
G
YTPS
I
E
N
M
R
N
------------------
L
--------------------
L
D
I
F
----------------
A
---------
Y
D--------
R
SLVT
D
E
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A
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L
R
Y
E
A
S
I
QP
G
-----
F
--------
Q
------------
E
-------------
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---------------------
F
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FPEPR
Q
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I
---
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---------
A
-------
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ASS----
D
------
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--
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N
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L
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V
E
F
F
N
E
A
------------------------------------------------
28
Fugue
59.26
16%
-
- C4 -
-
1UXO
-
YDEN_BACSU
A:
[2-187]
T
K
Q
V
Y
I
I
H
G
Y
RASSTNHW
F
P
W
L
K
K
R
L
L
A
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A
D
I
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N
M
P
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Q
-----------
P
-----------
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-
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----------------
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M----------------------------
L
--------------------
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-------------------
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---------
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---------
T
------------------
Q
-----
G
--------
S
------------
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-------------
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---------------------
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---------------
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---------
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-------
I
-------
I
------
E
--
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--
A
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T
S
--
L
P
I
V
Y
D
V
L
T
S
Y
F
S
K
----------------------------------------------
16
HHSearch
58.91
14%
-62
- C4 -
-
3W04
7
D14_ORYSJ
B:
[45-264]
---------------------------
R
---
V
V
L
Y
D
L
-
V
C
A
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S
VNPDHFDFRRY
D
-----------
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A
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V
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D
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L
A
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A
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I
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P
---
D
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K
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L
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A
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P
R
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N
D
S
----------------
D
YHGGFE
L
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A
N
Y
S
A
W
-----
A
--------------------
T
-------------------
G
---------
Y
A
P
L
A
V
GADV
P
------------------
A
A
----
V
--------
Q
------------
E
-------------
F
---------------------
S
R
T
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F
N
MR
P
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C
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T
V
F
K
T----
D
-------
L
-------
R
------
G
VL
G
M
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G-
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A
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--
L
A
Q
V
L
R
R
A
L
A
--------------------------------------------------
20
HHSearch
57.70
15%
-54
- C4 -
-
4IHA
1
D14_ORYSJ
A:
[47-267]
---------------------------
R
---
V
V
L
Y
D
L
-
V
C
A
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S
-----------
V
NPDHFDFRRYD
N
L
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A
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V
D
D
L
L
A
I
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D
A
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I
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R
C
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S
A
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I
L
A
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I
R
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P
---
D
L
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A
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L
I
G
A
S
P
R
F
L
N
D
S
----------------
D
YHGGFE
L
E
E
I
Q
Q
-----------------
V
--------------------
F
D
A
M
G
A
N
Y
S
A
W
A
T
-------
G
---------
Y
A
P
L
A
V
GADV
P
------------------
A
A
----
V
--------
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------------
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F
N
MR
P
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I
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------
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------------
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---------
K
-------
T
-------
D
LR----
G
VL
G
M
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A
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-
V
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G-
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A
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--
L
A
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V
L
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R
A
L
A
R
-------------------------------------------------
21
HHSearch
56.69
15%
-27
- C4 -
-
1WOM
9
RSBQ_BACSU
A:
[48-269]
---------------------------
R
---
V
I
L
F
D
Y
-
V
G
S
G
H
-----------
S
DLRAYDLNRYQ
T
L
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G
Y
A
Q
D
V
L
D
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C
E
A
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---
E
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PE--------------
Y
YGGFE
E
E
Q
L
L
G
------------------
L
L
E
M
M
E
K
N
Y
I
G
W
A
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F
A
A
T
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-
L
-------------------
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---------
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---------
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------------------
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E
--
I
K
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C
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TD
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-------
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-------
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------
E
DL
S
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P-
Y
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I
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D
Y
L
K
A
-------------------------------------------------
25
HHSearch
56.29
17%
-2
- C4 -
-
3BF7
-
YBFF_ECOLI
B:
[44-254]
---------------------------
N
---
I
I
Q
V
D
V
-
R
N
H
G
L
SPREPV-----
M
-----------
N
Y
P
A
M
A
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D
L
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D
T
L
D
A
L
Q
I
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---
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A
P
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D
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H
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R
----------------
R
HDEI-------------------------
F
AAINAVSESDAQTRQQAAAI
M
-------------------
R
QH-------
L
---------
N
EE----------------
G
-----
V
I-------
Q
FLLK--------
S
-------------
F
VDGEWRFNVPVL---------
W
---------------
D
---------
Q
-------
Y
PHIVGW-
E
------
K
I-
P
A
W
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H
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A
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A
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I
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R
Y
L
N
D
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17
HHSearch
54.57
15%
-14
- C4 -
-
4I3F
-
?
A:
[75-301]
---------------------------
H
---
C
L
A
P
D
I
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A
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F
G
L
-----------
S
QHN
C
P
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I
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L
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---
E
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G
A
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A
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G
----------
W
EFYKDPS
K
E
A
L
E
Y
----------------
L
--------------------
I
-------------------
T
K
F
L
------
F
D--------
P
------------------
S
LLGND
I
A
S
I
A
A
Q
R
F
D
------------
N
V
M
KDEV
R
L
Q
----
F
E
A
M
------------------
F
SGG
T
K
----------
K
---------
G
-------
I
D
A
F
VLS-
D
------
D
E
L
N
N
I
S
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M
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T
H
A
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E
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F
F
-
I
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N
--
N
A
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Y
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I
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R
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P-
N
-
A
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K
A
--
F
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N
L
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K
L
F
F
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G
M
F
-----------------------------------------------
19
HHSearch
53.10
13%
-30
- C4 -
-
3W06
5
KAI2_ARATH
A:
[47-269]
---------------------------
R
---
V
V
L
Y
D
N
-
M
G
A
G
T
-----------
T
NPDYFDFDRYS
N
L
E
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F
D
L
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A
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---
D
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R
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V
N
D
V
----------------
D
YQGGFE
Q
E
D
L
N
Q
-----------------
L
F
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A
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N
Y
K
A
W
C
--------
L
-------------------
G
---------
F
A
--------
P
L
A
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GGDM-----------
D
S
I
A
--
V
--------
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------------
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-------------
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R
T
------------------
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F
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MR
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G
---
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T
I
F
Q
S----
D
-------
M
-------
R
------
Q
IL
P
F
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C
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K
D
L
A
-
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P
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C
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S
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--
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H
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R
N
D
------------------------------------------------
18
HHSearch
51.47
12%
-35
- C4 -
-
5DNW
9
?
A:
[50-272]
---------------------------
R
---
V
L
L
Y
D
N
-
M
G
A
G
S
-----------
T
NPEYFHFERYS
T
L
Q
G
Y
A
H
D
L
L
V
I
L
H
E
F
N
I
R
S
C
I
F
V
G
H
S
L
S
A
M
T
G
A
I
A
S
I
I
R
P
---
D
L
F
Q
K
I
V
M
L
S
A
S
P
R
F
L
N
T
A
----------------
D
YLGGFE
P
A
D
V
E
Q
-----------------
L
A
GAIEAN
Y
K
S
W
---------
V
S
------------------
G
---------
F
A
P
M
V
V
GGDM
D
S-----------------
V
A
----
V
--------
Q
------------
E
-------------
F
S
R
T
L
F
N
MR
P
D
I
A
R
S
V
------
F
---------------
R
---------
T
I
F
T
SD--
L
-------
R
------
D
YL
G
R
V
T
V
P
C
H
I
I
Q
S
S
R
D
M
A
-
V
P
V
S
--
V
A
G
Y
I
H
N
R
V
G-
G
R
S
V
V
E
V
M
N
T
E
G
H
L
P
Q
L
S
A
P
E
V
--
A
I
P
V
L
L
R
H
I
K
N
D
------------------------------------------------
11
HHSearch
51.07
13%
-6
- C4 -
-
4PW0
-
?
A:
[65-282]
---------------------------
Q
---
L
I
I
F
D
N
-
K
G
V
G
L
-----------
S
SGTTPD-----
N
V
A
A
M
T
A
D
A
L
E
F
I
T
A
L
G
I
R
Y
F
D
V
L
G
F
S
L
G
G
F
I
V
Q
Y
M
A
H
I
Q
P
---
D
M
I
R
K
I
I
I
V
G
A
A
P
Q
G
V
K
V
L
H---------------
T
F
P
D
L
I
A
R
A
M
Q
LEP
K
E
R
-------------
F
--------------------
L
F
------------------
I
F--------
F
---------
E
QS
E
H
S
R
S
K
G
L
A
-------
T
-----
L
G
R
L
Y
----
E
RTTDRDQDAS
A
Q
A
-------------
I
G
A
Q
L
T
A
---------------
I
---------------
T
---------
N
-------
W
-------
G
K
KTPSF
E
I-
T
S
I
Q
H
P
V
F
V
V
Q
G
S
N
D
E
M
-
M
D
T
Y
--
N
S
Y
E
L
F
K
Q
L
P-
D
-
A
I
L
S
L
Y
P
D
A
A
H
G
S
F
Y
Q
Y
P
E
L
--
F
V
S
Q
T
E
Y
F
L
D
S
-------------------------------------------------
15
HHSearch
50.80
16%
13
- C4 -
-
4Y7D
-
?
B:
[62-301]
---------------------------
R
---
A
I
V
V
D
R
-
P
G
Y
F
G
TPLGSG-----
V
-----------
T
P
D
E
Q
A
E
L
Y
A
A
L
F
D
A
L
G
L
A
A
A
G
V
L
C
W
S
G
G
G
P
S
S
Y
R
L
A
A
R
H
P
---
D
R
V
R
A
L
V
S
V
A
A
V
S
H
R
Y
H
F
D
GEKGAEKVLMGTGLGR
R
-----------------------------
M
LQLMAAHTPEKL--------
V
-------------------
S
ATIAAEGH-
L
SK-------
E
------------------
H
-----
V
--------
A
------------
E
RVAQIMADPDKER
F
TLELAVSANHSGPRKAGFDND
M
---------------
D
---------
Q
-------
F
-------
A
RIDSL-
E
L-
D
R
I
T
A
P
T
L
V
V
S
G
T
A
D
S
D
-
V
D
P
E
--
F
S
R
F
A
A
A
Q
I
A-
G
-
S
E
L
V
H
L
D
A
G
T
H
L
A
F
W
V
H
P
D
S
GP
V
R
R
R
A
A
E
L
L
R
A
G
------------------------------------------------
26
HHSearch
50.17
13%
-5
* C4 *
-
5JD6
-
?
A:
[48-252]
---------------------------
K
---
V
L
I
P
E
L
-
P
L
Y
S
M
SLLK-------
T
-----------
S
V
G
T
F
A
R
Y
L
K
E
F
V
D
F
K
G
Y
E
N
V
I
L
L
G
N
S
L
G
G
H
I
A
L
L
A
T
K
M
F
P
---
E
I
V
Q
A
L
V
I
T
G
S
S
G
L
------------------------------------------------------------------------------------------------------------------------------------KEI--
V
--------
D
------------
E
-------------
V
Y
E
T
V
S
D
R
N
K
L
V
K
T
--------
L
A
I
A
------------
K
---------
S
A
I
R
----
H
-------
N
MA----
K
DL
P
K
M
K
T
P
T
C
I
I
W
G
K
N
D
N
V
-
T
P
P
E
--
V
A
E
D
F
K
R
L
L
P-
D
-
A
D
L
Y
W
I
D
K
C
G
H
A
A
M
M
E
H
P
E
E
--
F
N
Q
L
L
H
E
W
F
K
E
R
------------------------------------------------
8
HHSearch
50.10
13%
-38
- C4 -
-
3QVM
-
?
A:
[56-278]
---------------------------
T
---
V
I
V
F
D
Y
-
V
G
S
G
Q
-----------
S
DLESFSTKRYS
S
L
E
G
Y
A
K
D
V
E
E
I
L
V
A
L
D
L
V
N
V
S
I
I
G
H
S
V
S
S
I
I
A
G
I
A
S
T
H
V
G
---
D
R
I
S
D
I
T
M
I
C
P
S
P
C
F
M
N
F
P
PD--------------
Y
VGGFE
R
D
D
L
E
E
------------------
L
--------------------
I
N
L
M
D
K
N
Y
I
G
W
A
N
Y
L
A
PLVM
G
---------
A
---------
S
HS
S
---------------
E
L
----
I
--------
G
E
L
S
---------
G
-------------
S
F
C
T
TD
P
I
V
-------------
A
---------------
K
T
F
A
K
A
T
FFS
D
-------
Y
-------
R
------
S
LL
E
D
I
S
T
P
A
L
I
F
Q
S
A
K
D
S
L
-
A
S
P
E
--
V
G
Q
Y
M
A
E
N
I
P-
N
-
S
Q
L
E
L
I
Q
A
E
G
H
C
L
H
M
T
D
A
G
L
--
I
T
P
L
L
I
H
F
I
Q
N
N
------------------------------------------------
14
HHSearch
49.92
16%
12
- C4 -
-
4Y7D
-
?
A:
[62-301]
---------------------------
R
---
A
I
V
V
D
R
-
P
G
Y
F
G
TPLGSG-----
V
-----------
T
P
D
E
Q
A
E
L
Y
A
A
L
F
D
A
L
G
L
A
A
A
G
V
L
C
W
S
G
G
G
P
S
S
Y
R
L
A
A
R
H
P
---
D
R
V
R
A
L
V
S
V
A
A
V
S
H
R
Y
H
F
D
GEKG
A
E
K
V
L
M
G
T
G
L
G
R
R
-----------------------------
M
L
Q
L
M
A
A
HT
P
E
K
L
--------
V
-------------------
S
A
T
I
A
A
E
G
H-
L
S
K
-------
E
------------------
H
-----
V
--------
A
------------
E
R
V
A
Q
I
M
A
D
P
D
K
E
R
F
T
L
E
L
A
V
S
ANHSGPR
K
A
G
F
D
N
D
M
---------------
D
---------
Q
-------
F
-------
A
R
IDSL-
E
L-
D
R
I
T
A
P
T
L
V
V
S
G
T
A
D
S
D
-
V
D
P
E
--
F
S
R
F
A
A
A
Q
I
A-
G
-
S
E
L
V
H
L
D
A
G
T
H
L
A
F
W
V
H
P
D
S
G
P
V
R
R
R
A
A
E
L
L
R
A
G
------------------------------------------------
9
HHSearch
49.38
13%
-37
- C4 -
-
3QVM
-
?
B:
[56-280]
---------------------------
T
---
V
I
V
F
D
Y
-
V
G
S
G
Q
-----------
S
DLESFSTKRYS
S
L
E
G
Y
A
K
D
V
E
E
I
L
V
A
L
D
L
V
N
V
S
I
I
G
H
S
V
S
S
I
I
A
G
I
A
S
T
H
V
G
---
D
R
I
S
D
I
T
M
I
C
P
S
P
C
F
M
N
F
P
PD--------------
Y
VGGFE
R
D
D
L
E
E
------------------
L
--------------------
I
N
L
M
D
K
N
Y
I
G
W
A
N
Y
L
A
P
L
V
M
G
---------
A
---------
S
HS
S
---------------
E
L
----
I
--------
G
E
L
S
---------
G
-------------
S
F
C
T
TD
P
I
V
-------------
A
---------------
K
T
F
A
K
A
T
FFS
D
-------
Y
-------
R
------
S
LL
E
D
I
S
T
P
A
L
I
F
Q
S
A
K
D
S
L
-
A
S
P
E
--
V
G
Q
Y
M
A
E
N
I
P-
N
-
S
Q
L
E
L
I
Q
A
E
G
H
C
L
H
M
T
D
A
G
L
--
I
T
P
L
L
I
H
F
I
Q
N
N
Q
T
----------------------------------------------
24
HHSearch
49.37
14%
-7
- C4 -
-
3G9X
1
DHAA_RHOSO
A:
[60-294]
---------------------------
R
---
C
I
A
P
D
L
-
I
G
M
G
K
SDKPDLD----
Y
-----------
F
F
D
D
H
V
R
Y
L
D
A
F
I
E
A
L
G
L
E
E
V
V
L
V
I
H
D
W
G
S
A
L
G
F
H
W
A
K
R
N
P
---
E
R
V
K
G
I
A
C
M
E
F
I
R
P
F
P
T
W
D
EWPE------------
F
A
R
E
T
F
Q
A
F
R
TAD
V
G
R
E
L
IIDQNA------
F
--------------------
I
E------------------
G
A
L
P
K
C
VVRP
L
---------
T
E
V
----------------
E
-----
M
--------
D
------------
H
-------------
Y
R
EPFLKPVDR
E
P
L
--------
W
R
F
P
N
E
LPIAGEP---
A
---------
N
I
V
A
L
V
E
A
Y
-------
M
------
N
W
L
H
Q
S
P
V
P
K
L
L
F
W
G
T
P
G
V
L
-
I
P
P
A
--
E
A
A
R
L
A
E
S
L
P-
N
-
C
K
T
V
D
I
G
P
G
L
H
Y
L
Q
E
D
N
P
D
L
--
I
G
S
E
I
A
R
W
L
P
A
L
H
-----------------------------------------------
36
Fugue
49.16
18%
-85
- C2 -
-
5H35
3
?
C:
[1-195]
------------------------------------
M
-
Y
M
I
L
E
-----------
L
-----------
L
N
I
I
G
I
I
A
F
T
I
S
G
S
L
K
G
-
T
N
K
G
L
--
D
I
F
G
V
V
T
L
G
V
I
T
S
Y
A
G
G
I
I
A
D
I
L
L
G
I
Y
--
P
P
Q
I
L
K
E
L
N
----------------
Y
-----------------------------
L
--------------------
L
-------------------
L
---------
S
---------
V
------------------
G
-----
I
--------
S
------------
I
-------------
F
---------------------
V
---------------
F
---------
Y
-------
F
-------
Y
------
K
--
W
L
Q
T
N
P
I
K
M
I
I
A
I
S
D
A
V
G
L
S
T
F
A
T
L
G
A
S
L
A
Y
S
Y
--
G
-
L
N
P
I
S
V
G
L
I
A
A
I
-
V
G
T
G
G
G
V
--
I
R
D
V
L
V
N
E
I
P
M
V
L
T
K
E
I
Y
A
T
A
A
L
L
S
G
F
I
Y
Y
F
T
TPYLHHD
S
L
F
V
A
F
L
G
S
F
L
L
R
I
L
S
I
K
Y
N
F
7
HHSearch
48.13
14%
-11
- C4 -
-
4K2A
-
?
C:
[53-295]
---------------------------
H
---
C
I
A
P
D
L
-
I
G
Y
G
Q
SGKPDIS----
Y
-----------
R
F
F
D
Q
A
D
Y
L
D
A
L
I
D
E
L
G
I
A
S
A
Y
L
V
A
Q
D
W
G
T
A
L
A
F
H
L
A
A
R
R
P
---
Q
L
V
R
G
L
A
F
M
E
F
I
R
P
M
R
D
W
S
----------------
D
FHQHDAARETFRKFRTPGVGEAMILDNNA
F
--------------------
V
-------------------
E
RV-------
L
---------
P
GSILRTLSEE--------
E
-----
M
--------
A
------------
A
-------------
Y
RAP------------------
F
ATRESRMPTLMLP--
R
ELPIAGEPA
D
-------
V
TQALTAA
H
------
A
AL
A
A
S
T
Y
P
K
L
L
F
V
G
S
P
G
A
L
-
V
S
P
A
--
F
A
A
E
F
A
K
T
L
K-
H
-
C
A
V
I
Q
L
G
A
G
G
H
Y
L
Q
E
D
H
P
E
A
--
I
G
R
S
V
A
G
W
I
A
G
I
E
A
A
S
A
Q
R
-----------------------------------------