@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1829: (2018-01-20 )
MILKIEDLVMSIISTDLTPFQIDDTLKAALREDVHSEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDCIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAKSLDFSMKGLTYLDV

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NCN_K_11(2B7Q)
NADC_HELPY
[Raw transfer]




NCN_G_7(2B7Q)
NADC_HELPY
[Raw transfer]




NCN_I_9(2B7Q)
NADC_HELPY
[Raw transfer]




PHT_Q_17(2B7P)
NADC_HELPY
[Raw transfer]




PHT_O_15(2B7P)
NADC_HELPY
[Raw transfer]




NTM_Q_17(2B7N)
NADC_HELPY
[Raw transfer]




NTM_M_13(2B7N)
NADC_HELPY
[Raw transfer]




PHT_B_4(3C2R)
NADC_YEAST
[Raw transfer]




NTM_O_15(2B7N)
NADC_HELPY
[Raw transfer]




PHT_M_13(2B7P)
NADC_HELPY
[Raw transfer]




NTM_B_4(1QAP)
NADC_SALTY
[Raw transfer]




NTM_O_15(2B7N)
NADC_HELPY
[Raw transfer]




FMT_C_10(3L0G)
?
[Raw transfer]




FMT_B_8(3L0G)
?
[Raw transfer]




FMT_A_6(3L0G)
?
[Raw transfer]




FMT_C_10(3L0G)
?
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




FMT_D_12(3L0G)
?
[Raw transfer]




FMT_B_8(3L0G)
?
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




NTM_A_2(3C2O)
NADC_YEAST
[Raw transfer]




PHT_A_3(3C2R)
NADC_YEAST
[Raw transfer]




PRP_A_2(3C2F)
NADC_YEAST
[Raw transfer]




NTM_A_3(1QAP)
NADC_SALTY
[Raw transfer]




PRP_A_2(3C2V)
NADC_YEAST
[Raw transfer]




PRP_A_2(3C2V)
NADC_YEAST
[Raw transfer]




EDO_B_7(3L0G)
?
[Raw transfer]




2 PsiBlast_PDB 98.5298%-142 - C6 -5HUL - ? -
3 PsiBlast_PDB 98.3298%-148 - C6 -5HUO - ? -
1 PsiBlast_PDB 96.6299%-137 - C6 -5HUP - ? -
120 HHSearch 84.4198% -16 - C6 -5HUP - ? -
119 HHSearch 83.8697% -9 - C6 -5HUO - ? -
128 HHSearch 82.2846%-126 - C6 -1X1O - ? -
4 PsiBlast_PDB 82.0045%-125 - C6 -1X1O - ? -
126 HHSearch 74.7235%-138 - C6 -3TQV - ? -
8 PsiBlast_PDB 72.5740% -44 - C6 -5AYX - NADC_HUMAN -
52 PsiBlast_CBE 72.3840% -44 - C6 -5AYY - NADC_HUMAN -
11 PsiBlast_PDB 72.3640% -47 - C6 -5AYY - NADC_HUMAN -
9 PsiBlast_PDB 72.2540% -46 - C6 -4KWW - NADC_HUMAN -
65 PsiBlast_CBE 72.1640% -47 - C6 -2JBM - NADC_HUMAN -
50 PsiBlast_CBE 72.1040% -48 - C6 -5AYZ - NADC_HUMAN -
48 PsiBlast_CBE 72.0740% -47 - C6 -5AYZ - NADC_HUMAN -
10 PsiBlast_PDB 72.0740% -45 - C6 -4KWV - NADC_HUMAN -
37 PsiBlast_CBE 72.0340% -46 - C6 -4KWW - NADC_HUMAN -
44 PsiBlast_CBE 72.0240% -48 - C6 -5AYZ - NADC_HUMAN -
40 PsiBlast_CBE 72.0140% -44 - C6 -5AYZ - NADC_HUMAN -
57 PsiBlast_CBE 71.9840% -51 - C6 -5AYY - NADC_HUMAN -
132 HHSearch 67.6737% -95 - C6 -2B7N 3.7 NADC_HELPY
93 PsiBlast_CBE 65.7738% -82 - C6 -2B7P 3.9 NADC_HELPY
19 PsiBlast_PDB 65.5738% -81 - C6 -2B7N 3.5 NADC_HELPY
5 PsiBlast_PDB 65.5141% -20 - C6 -1QAP 3.0 NADC_SALTY
96 PsiBlast_CBE 65.1838% -79 - C6 -2B7N 3.7 NADC_HELPY
90 PsiBlast_CBE 65.1438% -77 - C6 -2B7Q 4.8 NADC_HELPY
20 PsiBlast_PDB 64.9838% -76 - C6 -2B7P 3.7 NADC_HELPY
95 PsiBlast_CBE 64.7338% -80 - C6 -2B7N 3.4 NADC_HELPY
129 HHSearch 64.4240% 3 - C6 -1QAP 3.0 NADC_SALTY
94 PsiBlast_CBE 64.1938% -80 - C6 -2B7P 3.7 NADC_HELPY
34 PsiBlast_CBE 63.6241% -23 - C6 -1QAP 3.7 NADC_SALTY
91 PsiBlast_CBE 63.4938% -75 - C6 -2B7Q 4.7 NADC_HELPY
124 HHSearch 63.0132% 4 - C6 -3L0G 3.1 ?
109 Fugue 62.7738% 2 - C6 -1QAP 3.0 NADC_SALTY
92 PsiBlast_CBE 62.7038% -76 - C6 -2B7Q 4.3 NADC_HELPY
125 HHSearch 62.2332% 4 - C6 -3L0G 2.3 ?
100 PsiBlast_CBE 59.0334% 14 - C6 -3L0G 2.7 ?
98 PsiBlast_CBE 58.9134% 15 - C6 -3L0G 3.1 ?
97 PsiBlast_CBE 58.5834% 13 - C6 -3L0G 2.2 ?
99 PsiBlast_CBE 58.3534% 15 - C6 -3L0G 2.9 ?
106 PsiBlast_CBE 57.3735% -35 - C6 -3C2V 2.7 NADC_YEAST
134 HHSearch 56.7635% -32 - C6 -3C2V 2.7 NADC_YEAST
108 PsiBlast_CBE 55.8835% -17 - C6 -3C2F 2.2 NADC_YEAST
107 PsiBlast_CBE 55.8335% -27 - C6 -3C2O 2.9 NADC_YEAST
105 PsiBlast_CBE 55.6935% -17 - C6 -3C2R 3.5 NADC_YEAST
104 PsiBlast_CBE 54.9335% -22 - C6 -3C2R 2.7 NADC_YEAST